feat: seroprevalence

.gitignore

@@ -5,7 +5,6 @@
 \.build
 \.cache
 \.env
-\.generated
 \.idea
 \.output
 \.reports

data/scripts/default_schema_values.py

@@ -2,6 +2,9 @@
 # Globals
 
 DEFAULTS = {
+        "PopulationData" : {
+          "seroprevalence": 0.0,
+        },
         "EpidemiologicalData" : {
             "latencyTime" : 3.0,
             "infectiousPeriod" : 3.0,

data/scripts/scenarios.py

@@ -141,13 +141,15 @@ def __init__(self, name='Intervention', tMin=None, tMax=None, id='', color='#ccc
 
 class PopulationParams(schema.ScenarioDatumPopulation):
     def __init__(self, region, age_distribution_name, population, beds, icus, cases_key):
+        defaults = DEFAULTS["PopulationData"]
         super(PopulationParams, self).__init__( \
                 case_counts_name=cases_key,
                 age_distribution_name=age_distribution_name,
                 hospital_beds=int(beds),
                 icu_beds=int(icus),
                 imports_per_day=0.1,
                 population_served=int(population),
+                seroprevalence=defaults['seroprevalence'],
                 initial_number_of_cases=int(round(FIT_CASE_DATA[region]['initialCases']
                                               if region in FIT_CASE_DATA else Fitter.cases_on_tMin)))