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feat: seroprevalence #777

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rneher merged 49 commits into master from feat/seroprevalence

Aug 29, 2020

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ivan-aksamentov commented Jul 31, 2020 •

edited

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Resolves #779
Contributes to #778

Adds seroprevalence parameter to the:

ivan-aksamentov added 5 commits

July 31, 2020 11:07


          feat: add seroprevalence to UI and schema

1d65606


          feat: commit types and validators for schema v2.1.0


          feat: add seroprevalence to serialization

ad7c32b


          feat: add seroprevalence in scenario data generator

464cd93


          feat: add serializer 2.2.0 to the list of serializers

12810db

vercel bot commented Jul 31, 2020 •

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ivan-aksamentov marked this pull request as draft

July 31, 2020 09:22

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          feat: account for seroprevalence in the algorithm

30c2c94

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ivan-aksamentov assigned rneher and ivan-aksamentov

ivan-aksamentov added 2 commits

July 31, 2020 12:42


          refactor: clarify the logic for susceptible population

a68311e


          feat: account for seroprevalence in recovered

aa713cc

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          refactor: clarify the logic for susceptible population more

2f96ce8

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ivan-aksamentov added 2 commits

July 31, 2020 12:48


          fix: add seroprevalence in test data

130f335


          fix: fix model tests

231d832

ivan-aksamentov force-pushed the feat/seroprevalence branch from 457355e to 231d832 Compare

July 31, 2020 10:49

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          fix: fi incorrect seroprevalence fraction

bace8be

The percentage was inversed erroneously

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          add immune vector to result -- allow it to be age specific

fd0f9d9


          Merge remote-tracking branch 'origin/master' into feat/seroprevalence

eecd11e

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          Merge branch 'master' into feat/seroprevalence

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rneher added 6 commits

August 22, 2020 13:17


          add burnin feature to start simulation with sensible mix of exposed, …

9bb491d

…infectious, severe, critical etc


          add prelim message to updates page

d23efa7


          catch masked seroprevalence

45b6d18


          update fit parameters

68dede5


          update scenarios

6a1fe95


          update seroprevalence help text

42b741e

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rneher added 3 commits

August 22, 2020 16:25


          include 1st wave scenarios

51dbe9c


          update help messages and about

8274ed1


          set yAxis limit for age chart

f65c37c

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rneher added 2 commits

August 25, 2020 20:37


          Merge branch 'master' into feat/seroprevalence

5803e84


          extend time horizon

5ac47fc

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ivan-aksamentov marked this pull request as ready for review

August 28, 2020 16:09

rneher added 4 commits

August 29, 2020 15:32


          update tsvs

038c66c


          update case count json

118a70e


          update fitting

2a7e864


          update scenarios

9fc9ec5

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rneher added 2 commits

August 29, 2020 15:39


          add note to disclaimer

a4bb32e


          version bump

e51099c

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rneher merged commit a24d96c into master

rneher deleted the feat/seroprevalence branch

August 29, 2020 14:10

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