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Merge branch 'master' into update_mr_model
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wasserth committed Dec 16, 2024
2 parents 48d7818 + 66f36ab commit 52478bf
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4 changes: 2 additions & 2 deletions .github/workflows/run_tests_os.yml
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run-tests:
strategy:
matrix:
# os: [ubuntu-latest, windows-latest, macos-latest] # fails on windows until https://github.com/MIC-DKFZ/nnUNet/issues/2396 is resolved
os: [ubuntu-latest, macos-latest]
os: [ubuntu-latest, windows-latest, macos-latest] # fails on windows until https://github.com/MIC-DKFZ/nnUNet/issues/2396 is resolved
# os: [ubuntu-latest, macos-latest]
python-version: ["3.10"]
runs-on: ${{ matrix.os }}

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2 changes: 1 addition & 1 deletion README.md
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Tool for segmentation of most major anatomical structures in any CT or MR image. It was trained on a wide range of different CT and MR images (different scanners, institutions, protocols,...) and therefore should work well on most images. A large part of the training dataset can be downloaded here: [CT dataset](https://doi.org/10.5281/zenodo.6802613) (1228 subjects) and [MR dataset](https://zenodo.org/doi/10.5281/zenodo.11367004) (298 subjects). You can also try the tool online at [totalsegmentator.com](https://totalsegmentator.com/) or as [3D Slicer extension](https://github.com/lassoan/SlicerTotalSegmentator).

**ANNOUNCEMENT: We recently added support for MR images. Try out by using the task `-ta total_mr` or see more details in our [paper](https://arxiv.org/abs/2405.19492).**
**ANNOUNCEMENT: We created a platform where anyone can help annotate more data to further improve TotalSegmentator: [TotalSegmentator Annotation Platform](https://annotate.totalsegmentator.com).**

Main classes for CT:
![Alt text](resources/imgs/overview_classes_v2.png)
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