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^r\.package\.example\.Rproj$ | ||
^\.Rproj\.user$ | ||
^LICENSE\.md$ | ||
^.github$ |
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--- | ||
name: Check 🛠 | ||
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||
on: | ||
pull_request: | ||
types: | ||
- opened | ||
- synchronize | ||
- reopened | ||
- ready_for_review | ||
branches: | ||
- main | ||
push: | ||
branches: | ||
- main | ||
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||
# This reusable workflow from insightsengineering/r.pkg.template will run once a PR to main branch is created. | ||
jobs: | ||
job-setup: | ||
name: Should we run R CMD check? | ||
runs-on: ubuntu-latest | ||
outputs: | ||
check_out: ${{ steps.check.outputs.run_r_cmd_check }} | ||
steps: | ||
- name: To check or not to check? | ||
id: check | ||
run: | | ||
echo "run_r_cmd_check=false" >> $GITHUB_OUTPUT | ||
r-cmd: | ||
name: R CMD Check 🧬 | ||
needs: job-setup | ||
# Call a workflow from a given GitHub repository, from a given branch (or tag). | ||
uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main | ||
if: > | ||
needs.job-setup.outputs.check_out == 'true' |
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--- | ||
name: Simple workflow | ||
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on: | ||
pull_request: | ||
types: | ||
- opened | ||
- synchronize | ||
- reopened | ||
- ready_for_review | ||
branches: | ||
- main | ||
push: | ||
branches: | ||
- main | ||
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||
env: | ||
# additional flags for `R CMD CHECK` | ||
EXTRA_CHECK_FLAGS: "--no-manual --no-vignettes" | ||
# additional environmental vars for `R CMD CHECK` | ||
# see manual here: https://rstudio.github.io/r-manuals/r-ints/Tools.html | ||
_R_CHECK_TESTS_NLINES_: 0 | ||
_R_CHECK_VIGNETTES_NLINES_: 0 | ||
ENABLED_STEPS: | | ||
checkout_repository | ||
# setup_r | ||
# setup_dependencies | ||
# get_package_name | ||
# build_r_package | ||
# run_r_cmd_check | ||
# upload_artifact | ||
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jobs: | ||
# First job. | ||
hello-world-from-r: | ||
name: Hello, world! | ||
runs-on: ubuntu-latest | ||
steps: | ||
- name: Setup R 🔧 | ||
uses: r-lib/actions/setup-r@v2 | ||
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- name: Hello world! 💬 | ||
run: cat(paste0("Hello ", Sys.getenv("NAME"), "! 👋")) | ||
shell: Rscript {0} | ||
env: | ||
NAME: "Your name" | ||
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# Second job - by default jobs will run in parallel, unless some dependencies | ||
# are introduced between them. | ||
build-and-check: | ||
name: Build R package | ||
runs-on: ubuntu-latest | ||
steps: | ||
- name: Checkout repo 🛎 | ||
# We're using an official GitHub Action. | ||
uses: actions/[email protected] | ||
if: contains(env.ENABLED_STEPS, 'checkout_repository') | ||
with: | ||
# Action inputs (arguments/parameters). | ||
# In this case we clone the repository to the directory called the same | ||
# as the repository name. | ||
path: ${{ github.event.repository.name }} | ||
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||
- name: Setup R 🔧 | ||
if: contains(env.ENABLED_STEPS, 'setup_r') | ||
# We're using a third-party GitHub Action. | ||
uses: r-lib/actions/setup-r@v2 | ||
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||
- name: Setup R dependencies 🔧 | ||
# We're using a third-party GitHub Action. | ||
uses: r-lib/actions/setup-r-dependencies@v2 | ||
if: contains(env.ENABLED_STEPS, 'setup_dependencies') | ||
with: | ||
working-directory: ${{ github.event.repository.name }} | ||
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# Get package name and version from DESCRIPTION so that we'll know | ||
# what's the name of the tar.gz file with the built package. | ||
# pkgbuild is set as an output which can be accessed by subsequent steps. | ||
- name: Get package name 📦 | ||
if: contains(env.ENABLED_STEPS, 'get_package_name') | ||
id: package-name | ||
run: | | ||
PKGBUILD="$(Rscript -e 'cat(sprintf("%s_%s.tar.gz",(dcf <- read.dcf("DESCRIPTION"))[,"Package"], dcf[,"Version"]))')" | ||
echo "PKGBUILD = $PKGBUILD" | ||
echo "pkgbuild=$PKGBUILD" >> $GITHUB_OUTPUT | ||
shell: bash | ||
working-directory: ${{ github.event.repository.name }} | ||
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# Build a package stored in a directory called ${{ github.event.repository.name }} | ||
# --no-manual --no-build-vignettes because this requires LaTeX. | ||
- name: Build R package 🏗 | ||
if: contains(env.ENABLED_STEPS, 'build_r_package') | ||
run: | | ||
R CMD build --no-manual --no-build-vignettes ${{ github.event.repository.name }} | ||
ls -l | ||
shell: bash | ||
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||
# Check tar.gz package built in previous step. | ||
# --no-manual --no-vignettes because this requires LaTeX. | ||
- name: Run R CMD check 🏁 | ||
if: contains(env.ENABLED_STEPS, 'run_r_cmd_check') | ||
run: | | ||
env | grep -E '^_R' | ||
echo "Let's run R CMD check..." | ||
R CMD check ${EXTRA_CHECK_FLAGS} ${{ steps.package-name.outputs.pkgbuild }} | ||
shell: bash | ||
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||
- name: Get tar.gz file name | ||
if: contains(env.ENABLED_STEPS, 'upload_artifact') | ||
id: tar-gz | ||
# Use our custom action. | ||
uses: user-workshop-cicd/action-example@setup-action | ||
with: | ||
filename-beginning: ${{ github.event.repository.name }} | ||
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# Upload tar.gz package as an artifact so it can be downloaded. | ||
- name: Upload package build ⤴ | ||
if: contains(env.ENABLED_STEPS, 'upload_artifact') | ||
uses: actions/upload-artifact@v4 | ||
with: | ||
# Output of the custom action from the previous step | ||
# are inputs of this action. | ||
path: ${{ steps.tar-gz.outputs.full-filename }} | ||
name: ${{ steps.tar-gz.outputs.full-filename }} | ||
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call-reusable-workflow: | ||
name: Reusable workflow ♻️ | ||
uses: user-workshop-cicd/r.pkg.template/.github/workflows/sample-reusable-workflow.yaml@sample-reusable-workflow | ||
with: | ||
name: Octocat |
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@@ -8,4 +8,4 @@ test_that("hello_cli() works", { | |
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test_that("fix me!!!", { | ||
expect_equal(1, 2) | ||
}) | ||
}) |