Update GH workflow to process allowed_base_images.txt (#187)

* Update shell script to test the new changes, and remove the `master` trigger --------- Co-authored-by: Pauline Ribeyre <[email protected]>
uc-cdis · Jun 11, 2024 · ad758f0 · ad758f0
1 parent 416329a
commit ad758f0
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diff --git a/.github/workflows/get_layer_info_for_nf_imgs.yml b/.github/workflows/get_layer_info_for_nf_imgs.yml
@@ -22,6 +22,16 @@ jobs:
           TOKEN=$(curl -s https://public.ecr.aws/token/ | jq -r .token)
           layer_json="{}"
           while IFS= read -r image_url; do
+            # Ignore lines that start with #
+              if [[ "$image_url" == \#* ]]; then
+                echo "Skipping this line -- $image_url"
+                continue
+              fi
+            # Strip the first * if a line starts with *
+              if [[ "$image_url" == \** ]]; then
+                echo "Stripping * from this line -- $image_url"
+                image_url="${image_url:1}"
+              fi
               manifest_url=$(echo ${image_url} | sed 's|public\.ecr\.aws/\(.*\):\(.*\)|https://public.ecr.aws/v2/\1/manifests/\2|')
               tag_name=$(echo ${image_url} | sed 's|\(.*\):\(.*\)|\2|')
               echo $manifest_url, $tag_name

diff --git a/nextflow-base-images/allowed_base_images.txt b/nextflow-base-images/allowed_base_images.txt
@@ -1,3 +1,4 @@
+# Note that base images with an asterisk `*` are temporarily unavailable for use and are being updated.
 public.ecr.aws/u5x5h6w3/nextflow-approved/public:amazonlinux-base
 public.ecr.aws/u5x5h6w3/nextflow-approved/public:gen3-cuda-11.8-ubuntu22.04-openssl
 public.ecr.aws/u5x5h6w3/nextflow-approved/public:gen3-cuda-12.3-ubuntu22.04-openssl