Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Failed to run hmmeralign #139

Open
Lee-lab888 opened this issue Nov 30, 2024 · 0 comments
Open

Failed to run hmmeralign #139

Lee-lab888 opened this issue Nov 30, 2024 · 0 comments

Comments

@Lee-lab888
Copy link

Lee-lab888 commented Nov 30, 2024

Hi,
I`ve installed sepp and pasta from bioconda (conda install sepp) and have been trying to execute run_upp.py under conda environment ("run_upp.py -s sequence.faa -m amino -M 300 -T 0.66"), but I get the following error:
log.txt

Packages in environment:
Name Version
dendropy 5.0.1
clustalw 2.1
freetype 2.12.1
hmmer 3.4
mafft 7.526
pasta 1.9.2
python 3.10.15
sepp 4.5.5

Any idea on how this can be fixed?

Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant