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datelife v0.6.6

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@LunaSare LunaSare released this 17 Dec 07:31
· 82 commits to master since this release
  • when congruification fails, return NA and produce a warning on functions that use geiger::congruify.phylo():
    • congruify_and_mrca_phylo()
    • extract_calibrations_phylo()
    • congruify_and_check()
  • changes to congruify_and_mrca_multiPhylo():
    • filters out results of congruify_and_mrca_phylo() that do not inherit data.frame; usually this happens when congruification fails
    • correctly assigns congruified phy as attribute
  • use_calibrations_bladj.matchedCalibrations() correctly uses calibrations argument
  • get_ott_children() added error handling for when OpenTree APIs might be down, or there is no internet connection
  • varius fixes to make_datelife_query() et al. functions
  • added a new vignette for making datelife query functions (allows testing various functionalities)