Repositories list

• media-prediction

  Public
  Prediction of media requirements for microbial species

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•7•0•Updated Jan 18, 2025Jan 18, 2025

• Geomosaic

  Public
  A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

  pipelinemetagenomicscustomizable+ 5microbial-communitieswgswhole-genome-sequencingmetagenomic-analysismetagenomic-pipeline

  Python

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•4•0•0•Updated Jan 15, 2025Jan 15, 2025

• Selci_et_al_Origin_and_fate_of_methane

  Public
  Data and code relative to the Selci et al manuscript discussing the origin and fate of methane in convergent margins

  R

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• hydrogenotrophy_UHS_review

  Public
  Additional material for the Hydrogenotrophy in Underground Hydrogen Storage and Natural hydrogen review

  0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• Ecoli_trace_metal_metabolic_shift

  Public
  Data from the E. coli trace metal availability experiment controlling metabolic shifts

  Jupyter Notebook

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• Basili_et_al_Central_America_Convergent_Margin

  Public
  Repository containing the data relative to the paper "Shifts in subsurface microbial community structure along the geological features of the Central American Volcanic Arc"

  Jupyter Notebook

  •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

• pipeline-hmm

  Public
  Pipeline for generating HMM profiles and functionally annotating with them.

  hmmmetagenomics

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Dec 20, 2024Dec 20, 2024

• esa-hackathon

  Public
  Repository for the ESA Space Omics Hackathon

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•1•2•0•Updated Oct 17, 2024Oct 17, 2024

• Selci_et_al_Hot_springs_pathogens

  Public
  Data and code relative to the Selci et al manuscript about the abundance and antimicrobial resistance of putative pathogens in the Costa Rica hot springs.

  R

  •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• PRA_MeltingICE

  Public
  Repository for the Italian PRA MeltingICE project

  0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• Field_3D-printed_peristaltic_pump

  Public
  Plans for the portable 3D printed peristaltic pump for field use developed in the Giovannelli Lab

  Other

  •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• giovannellilab.github.io

  Public
  Book for documentation, tutorial and protocols of the Giovannelli Lab.

  TeX

  •0•1•0•0•Updated Jul 14, 2024Jul 14, 2024

• HYD22_project

  Public
  Data from the HYD22 expedition to sample hydrogen springs in Italy

  0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

• Book_microbiology_extreme_env

  Public
  Repository for the open book on the Microbiology of Extreme Environments

  Makefile

  •

  Other

  •0•0•0•0•Updated May 22, 2024May 22, 2024

• polygonPlot

  Public
  Repository describing the Polygons plot for multivariate data range visualization

  R

  •

  Other

  •1•0•3•0•Updated May 21, 2024May 21, 2024

• geochem

  Public
  Geochemistry pipeline for processing and visualising data from IRMS, IC and ICP-MS

  microbiologygeochemistry

  R

  •

  Other

  •0•0•12•0•Updated May 21, 2024May 21, 2024

• Chile22_Expedition_Report

  Public
  0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

• .github

  Public
  0•0•0•0•Updated Feb 19, 2024Feb 19, 2024

• hydecarb

  Public
  Website for the PRIN2022 project HYDECRAB (MUR 20224YR3AZ)

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

• GRL22_Expedition_report

  Public
  Data from the GHOST GRL22 Leg 1 Expedition report

  0•0•0•0•Updated Dec 14, 2023Dec 14, 2023

• biometal_transporters

  Public
  Environmental diversity, distribution and evolution of microbial metal ion transport systems

  Shell

  •0•1•0•0•Updated Nov 7, 2023Nov 7, 2023

• ideARG_2020

  Public
  Eco-evolutionary approach to identification and isolation of freshwater bacteria harbouring antibiotic resistance genes - IdeARG

  Jupyter Notebook

  •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

• CH22_metagenomes

  Public
  Metagenomic analysis of 32 samples of filtered geothermal fluids collected in Chile (2022)

  Shell

  •0•0•0•0•Updated Oct 25, 2023Oct 25, 2023

• Shallow_vent_degassing_paper_2022

  Public
  R

  •1•0•0•0•Updated Aug 9, 2023Aug 9, 2023

• Montemagno_et_al_Shark_Microbiome

  Public
  Repository containing the data relative to the paper "Shark microbiome analysis demonstrates unique microbial communities in two distinct Mediterranean Sea shark species"

  R

  •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

• Biogeochemistry_and_oxidoreductases_metals

  Public
  Repository containing the data relative to the paper "Oxidoreductases and metal cofactors in the functioning of Earth"

  0•0•0•0•Updated May 14, 2023May 14, 2023

• GiovannelliLab_SOPs

  Public
  Repository containing the Standard Operating Procedures for the analysis carried out in the Giovannelli Lab at the University of Naples Federico II, Italy

  0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• Selci_et_al_Meromictic_lake_carbon_cycle

  Public
  Data and code for the Selci et al 2023 paper on the biological controls over the carbon cycle in a meromictic lake

  0•0•0•0•Updated Jan 31, 2023Jan 31, 2023

• Cordone_et_al_Southern_Ocean_microbial_diversity

  Public
  Datasets and code for the Cordone et al. paper describing the microbial diversity in the surface waters crossing the ocean fronts from New Zealand to the Ross Sea, Antarctica

  R

  •0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

• Barosa_et_al_Aeolian_shallow_vent_diversity

  Public
  Data and code to reproduce the analysis of the 16S rRNA dataset and geochemistry of the shallow water vents of the Aeolian Islands

  0•0•0•0•Updated Dec 24, 2022Dec 24, 2022