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    48 repositories

    • Pubgrade

      Public
      Pubgrade is a decoupled, publish-subscribe-based continuous integration (CI) and continuous delivery (CD) microservice that allows developers to notify deploments of available updates
      pythondockerflaskmongodbcicd
      Python
      •
      Apache License 2.0
      •3•3•6•3•Updated Jan 18, 2025Jan 18, 2025

    • test-sec-ci

      Public
      dummy test ci, please ignore, results are to be implemented in cookicutter for better security of projects.
      0•0•0•1•Updated Jan 16, 2025Jan 16, 2025

    • elixir-cloud-aai.github.io

      Public
      Documentation for the ELIXIR::GA4GH Cloud
      documentationdocscloudelixirga4gh
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •2•2•1•3•Updated Jan 14, 2025Jan 14, 2025

    • cookiecutter-python

      Public
      Cookiecutter template for creating a Python project with Poetry, including configurations for various project settings.
      Python
      •
      Apache License 2.0
      •0•1•11•3•Updated Jan 14, 2025Jan 14, 2025

    • cwl-WES

      Public
      Trigger CWL workflows via GA4GH WES and TES
      workflowelixirga4ghhacktoberfest
      Python
      •
      Apache License 2.0
      •19•16•25•6•Updated Jan 10, 2025Jan 10, 2025

    • proTES

      Public
      Proxy service for injecting middleware into GA4GH TES requests
      api-gatewayga4ghhacktoberfesttask-execution
      Python
      •
      Apache License 2.0
      •6•8•19•3•Updated Jan 10, 2025Jan 10, 2025

    • TESK

      Public
      GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
      ga4ghhacktoberfesttesk
      Python
      •
      Apache License 2.0
      •30•40•43•3•Updated Jan 9, 2025Jan 9, 2025

    • proWES

      Public
      Proxy service for injecting middleware into GA4GH WES requests
      api-gatewayga4ghhacktoberfestga4gh-wes
      Python
      •
      Apache License 2.0
      •5•3•28•1•Updated Jan 9, 2025Jan 9, 2025

    • cloud-components

      Public
      Reusable components for the ELIXIR Cloud
      reactfront-endweb-componentslitmicrofrontendturborepo
      TypeScript
      •
      Apache License 2.0
      •20•8•33•5•Updated Jan 6, 2025Jan 6, 2025

    • foca

      Public
      Opinionated Flask microservice archetype for quick OpenAPI-based microservice development
      flaskmongodbrest-apiapiswaggeropenapiopenapi3
      Python
      •
      Apache License 2.0
      •12•16•25•3•Updated Jan 6, 2025Jan 6, 2025

    • openapi-test-runner

      Public
      An application allowing the TES servers to test their conformance to TES Specifications
      HTML
      •
      Apache License 2.0
      •6•4•8•3•Updated Jan 3, 2025Jan 3, 2025

    • tesk-core

      Public
      Python code that is launched as images into the Kubernetes cluster by tesk-api.
      ga4ghtesk
      Python
      •
      Apache License 2.0
      •13•2•3•1•Updated Dec 16, 2024Dec 16, 2024

    • ga4gh-sdk

      Public
      Generic SDK and CLI for GA4GH API services
      Rust
      •
      Apache License 2.0
      •3•13•30•2•Updated Dec 12, 2024Dec 12, 2024

    • krini

      Public
      Run & manage life science analyses
      JavaScript
      •
      Apache License 2.0
      •6•5•7•5•Updated Dec 6, 2024Dec 6, 2024

    • tesk-api

      Public
      GA4GH TES API Service that translates tasks into Kubernetes Batch API calls
      ga4ghtesk
      Java
      •
      Apache License 2.0
      •18•7•11•3•Updated Nov 6, 2024Nov 6, 2024

    • biohackeu24-issues

      Public
      Fallback issue board for "The BioHackathon Cloud" project @ BioHackEU24
      issues-only
      Apache License 2.0
      •0•1•10•0•Updated Nov 5, 2024Nov 5, 2024

    • cloud-storage-handler

      Public
      File handler utilizing TUS and MinIO with DRS-Filer integration.
      Python
      •
      Apache License 2.0
      •2•0•4•4•Updated Oct 31, 2024Oct 31, 2024

    • crate-db

      Public
      Microservice for handling RO-Crates
      Python
      •
      Apache License 2.0
      •0•1•20•0•Updated Oct 28, 2024Oct 28, 2024

    • CrateGen

      Public
      Compile GA4GH WES and TES requests from Workflow Run RO-Crates and package WES and TES runs as Workflow Run RO-Crates
      Python
      •
      Apache License 2.0
      •1•1•4•4•Updated Oct 21, 2024Oct 21, 2024

    • actions

      Public
      Central repo for reusable Github actions
      0•0•1•3•Updated Oct 14, 2024Oct 14, 2024

    • landing-page

      Public
      ELIXIR Cloud & AAI landing page
      TypeScript
      •
      Apache License 2.0
      •14•4•10•3•Updated Oct 7, 2024Oct 7, 2024

    • web-components

      Public
      GA4GH Web components are the reusable custom elements that can be utilized in your web apps & web pages independently irrespective of what framework/library you are using to build the frontend.
      web-componentsga4ghstenciljstailwindelixir-cloud
      TypeScript
      •
      MIT License
      •6•6•12•1•Updated Oct 4, 2024Oct 4, 2024

    • elixir-cloud-aai.github.io-backend

      Public archive
      JavaScript
      •
      Apache License 2.0
      •1•0•0•2•Updated Oct 4, 2024Oct 4, 2024

    • demo-workflows

      Public
      Demo workflows for ELIXIR Cloud & AAI stack
      Common Workflow Language
      •
      Apache License 2.0
      •3•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • cloud-registry

      Public
      GA4GH Service Registry API implementation for the ELIXIR Cloud
      Python
      •
      Apache License 2.0
      •1•4•14•1•Updated Sep 10, 2024Sep 10, 2024

    • protes-middleware-crypt4gh

      Public
      proTES middleware adding support for Crypt4GH
      Python
      •
      Apache License 2.0
      •0•1•1•1•Updated Sep 6, 2024Sep 6, 2024

    • cloud-telemetry

      Public
      Makefile
      •
      Apache License 2.0
      •1•2•0•2•Updated Sep 3, 2024Sep 3, 2024

    • foca-ga4gh

      Public
      Adds GA4GH utilities to the FOCA microservice archetype
      1•0•3•0•Updated Aug 7, 2024Aug 7, 2024

    • drs-filer

      Public
      Lightweight, flexible Flask/Gunicorn-based GA4GH DRS implementation
      hacktoberfest
      Python
      •
      Apache License 2.0
      •8•6•9•5•Updated Aug 6, 2024Aug 6, 2024

    • trs-filer

      Public
      Lightweight, flexible Flask/Gunicorn-based GA4GH TRS implementation
      hacktoberfest
      Python
      •
      Apache License 2.0
      •6•8•10•0•Updated Jul 16, 2024Jul 16, 2024