Ensembl Project

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210 repositories

plant-scripts
Public
Scripting analyses of genomes in Ensembl Plants
Perl
•
Apache License 2.0
•9•38•1•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-dauphin-style-compiler
Public
"dauphin" style-compiler for genome browser
Rust
•0•0•9•3•Updated Jan 17, 2025Jan 17, 2025
ensembl-compara
Public
The Ensembl Compara Perl API and SQL schema
mysql api bioinformatics database comparative-genomics perl ensembl
Perl
•
Apache License 2.0
•69•51•0•3•Updated Jan 17, 2025Jan 17, 2025
public-plugins
Public
Plugins for an Ensembl website
JavaScript
•
Apache License 2.0
•46•9•0•5•Updated Jan 17, 2025Jan 17, 2025
ensembl-datacheck
Public
Code for checking Ensembl databases during release production
Perl
•
Apache License 2.0
•28•5•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-production-metazoa
Public
Metazoan production helper library and script to import ad-hoc annotations.
Shell
•
Apache License 2.0
•1•1•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-production
Public
Ensembl Production code
Perl
•
Apache License 2.0
•42•11•0•6•Updated Jan 17, 2025Jan 17, 2025
guiHive
Public
Graphical interface for the eHive workflow manager
javascript d3 svg bootstrap jquery golang html-template perl graphical-interface ehive
JavaScript
•
Apache License 2.0
•3•5•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-handover
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-datachecks
Public
JavaScript
•
Apache License 2.0
•0•1•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-biomart
Public
Code to build the ensembl and ensembl genomes marts
Perl
•8•3•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-database-loader
Public
A eHive Pipeline for loading Ensembl and Ensembl Genomes databases to a MySQL compatible server
perl5 mysql hive ensembl-genomes
Perl
•
Apache License 2.0
•1•5•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-dj-metadata-orm
Public
Django models only version related to ensembl_metadata database mysql layer
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-metadata
Public
API for storing and querying metadata from Ensembl and EnsemblGenomes
Perl
•
Apache License 2.0
•5•5•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-metadata-admin
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-metadata-api
Public
ensembl_genome_metadata schema SQLAlchemy ORM layer
Python
•
Apache License 2.0
•2•1•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-metadata-registry
Public
REST API for ensembl-metadata
Python
•
Apache License 2.0
•0•2•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-core
Public
Python
•
Apache License 2.0
•1•0•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-event
Public
Python
•
Apache License 2.0
•0•0•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-gifts
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-jira
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-masterdb
Public
Ensembl Browser Reference Database Administration Backend
Python
•
Apache License 2.0
•1•0•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-metadata
Public
Python
•
Apache License 2.0
•0•0•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-reporting
Public
Python applications used for reporting status and outcomes of EnsEMBL Production Pipelines and other internal Production services.
Python
•
Apache License 2.0
•0•0•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-prodinf-tools
Public
Python
•
Apache License 2.0
•1•0•0•1•Updated Jan 17, 2025Jan 17, 2025
ensembl-taxonomy
Public
API for accessing NCBI taxonomy
api perl ncbi-taxonomy ensembl
Perl
•
Apache License 2.0
•2•1•0•0•Updated Jan 17, 2025Jan 17, 2025
ensembl-web-metadata-api
Public
Metadata API for beta.ensembl.org
Python
•
Apache License 2.0
•0•0•0•1•Updated Jan 16, 2025Jan 16, 2025
ensembl-production-imported
Public
Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
Perl
•
Apache License 2.0
•4•1•0•0•Updated Jan 16, 2025Jan 16, 2025
ensembl-web-tools-api
Public
Python
•
Apache License 2.0
•0•0•0•1•Updated Jan 15, 2025Jan 15, 2025
ensembl-genomio
Public
Pipelines to turn basic genomic data into Ensembl cores and back
Python
•
Apache License 2.0
•7•9•0•2•Updated Jan 15, 2025Jan 15, 2025