Set default dedup chunksize to 10,000

open2c · Nov 20, 2023 · c5a1561 · c5a1561
1 parent 3679207
commit c5a1561
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pairtools/cli/dedup.py b/pairtools/cli/dedup.py
@@ -113,7 +113,7 @@
 @click.option(
     "--chunksize",
     type=int,
-    default=100_000,
+    default=10_000,
     show_default=True,
     help="Number of pairs in each chunk. Reduce for lower memory footprint."
     " Below 10,000 performance starts suffering significantly and the algorithm might"