Code

OBI with workshop-revised COB demo#1834

Code

Draft

sebastianduesing wants to merge 33 commits intomasterobi-ontology/obi:masterfrom cob_transition_3obi-ontology/obi:cob_transition_3Copy head branch name to clipboard

+1,390-1,238

Commits

Commits on Oct 25, 2024

• Replace OMO import with versioned OMO import

  sebastianduesing

  committed
  9c7986c

  Copy full SHA for 9c7986c

• Add OntoFox RO import and drop external-byhand

  sebastianduesing

  committed
  ced9b9a

  Copy full SHA for ced9b9a

• Prepare IAO import file

  sebastianduesing

  committed
  04389c2

  Copy full SHA for 04389c2

• Remove BFO import

  sebastianduesing

  committed
  07bf569

  Copy full SHA for 07bf569

• Add import of revised COB

  sebastianduesing

  committed
  972064d

  Copy full SHA for 972064d

Commits on Oct 28, 2024

• Relabel alternative term to alternative label in all templates

  sebastianduesing

  committed
  5245b12

  Copy full SHA for 5245b12

• Replace inheres in and bearer of with characteristic of and has characteristic

  sebastianduesing

  committed
  eb9e87f

  Copy full SHA for eb9e87f

• Redirect CHEBI:atom references to COB:atom

  sebastianduesing

  committed
  5d7da15

  Copy full SHA for 5d7da15

• Redirect CHEBI:molecular entity references to COB:molecule

  sebastianduesing

  committed
  b03f544

  Copy full SHA for b03f544

Commits on Oct 31, 2024

• Obsolete OBI:device and redirect to COB:device

  sebastianduesing

  committed
  b79d55c

  Copy full SHA for b79d55c

Commits on Nov 1, 2024

• Obsolete OBI:organism and redirect to COB:organism

  sebastianduesing

  committed
  97f0623

  Copy full SHA for 97f0623

• Obsolete OBI:planned process and redirect to COB:CEPP

  sebastianduesing

  committed
  13238a7

  Copy full SHA for 13238a7

• Obsolete OBI:material processing and redirect to COB:material processing

  sebastianduesing

  committed
  e83988f

  Copy full SHA for e83988f

• Line order update to obi-edit by Protege

  sebastianduesing

  committed
  30c60b3

  Copy full SHA for 30c60b3

• Remove BFO:0000001

  sebastianduesing

  committed
  a850a9a

  Copy full SHA for a850a9a

• Remove BFO:0000002

  sebastianduesing

  committed
  fb3c0f0

  Copy full SHA for fb3c0f0

• Remove BFO:0000003

  sebastianduesing

  committed
  0bae0fd

  Copy full SHA for 0bae0fd

• Remove BFO:0000004

  sebastianduesing

  committed
  082607d

  Copy full SHA for 082607d

• Remove BFO:0000019

  sebastianduesing

  committed
  4f065ec

  Copy full SHA for 4f065ec

• Remove BFO:0000020

  sebastianduesing

  committed
  40478c2

  Copy full SHA for 40478c2

• Remove BFO:0000028

  sebastianduesing

  committed
  ad9bb8a

  Copy full SHA for ad9bb8a

• Remove one usage of BFO:0000031

  sebastianduesing

  committed
  72981f0

  Copy full SHA for 72981f0

• Line order update by Protege

  sebastianduesing

  committed
  2850a17

  Copy full SHA for 2850a17

• Remove BFO:0000035

  sebastianduesing

  committed
  738995c

  Copy full SHA for 738995c

• Fix duplicate labels

  sebastianduesing

  committed
  e840aac

  Copy full SHA for e840aac

• Obsolete OBI:processed material and redirect to COB:processed material entity

  sebastianduesing

  committed
  c9c6973

  Copy full SHA for c9c6973

Commits on Nov 6, 2024

• Update version of COB

  sebastianduesing

  committed
  e42f22b

  Copy full SHA for e42f22b

• Remove unused BFO_0000066

  sebastianduesing

  committed
  547fbc8

  Copy full SHA for 547fbc8

• Relabel terms in templates

  sebastianduesing

  committed
  e4b218a

  Copy full SHA for e4b218a

• Import 'realized in'

  sebastianduesing

  committed
  fb84f84

  Copy full SHA for fb84f84

• Fix weird quoting in assays.tsv

  sebastianduesing

  committed
  1a4ee1b

  Copy full SHA for 1a4ee1b

• Run make modules

  sebastianduesing

  committed
  ae0fc5b

  Copy full SHA for ae0fc5b

Commits on Nov 13, 2024

• Update OMO version

  sebastianduesing

  committed
  24558f1

  Copy full SHA for 24558f1