Merge pull request #1841 from obi-ontology/1559_linked_read_sequencin…

…g_assay Add linked-read sequencing assay
obi-ontology · Jan 6, 2025 · f05e43f · f05e43f
2 parents d265033 + 1393750
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diff --git a/src/ontology/modules/assays.owl b/src/ontology/modules/assays.owl
@@ -25090,6 +25090,28 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OBI_0003412 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003412">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000626"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0000834"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000111>linked-read sequencing assay</obo:IAO_0000111>
+        <obo:IAO_0000115 xml:lang="en">A DNA sequencing assay that uses microfluidics to partition and barcode high molecular weight DNA such that short reads derived from fragments of the large piece of DNA can be assembled within the context of the high molecular weight piece of DNA they are derived from, facilitating the use of short read data to sequence and assemble large genomes.</obo:IAO_0000115>
+        <obo:IAO_0000117>Michelle Giglio</obo:IAO_0000117>
+        <obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
+        <obo:IAO_0000119>Michelle Giglio</obo:IAO_0000119>
+        <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1559</obo:IAO_0000233>
+        <obo:IAO_0000234>CFDE</obo:IAO_0000234>
+        <rdfs:label>linked-read sequencing assay</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/OBI_0003418 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003418">

diff --git a/src/ontology/templates/assays.tsv b/src/ontology/templates/assays.tsv
@@ -610,6 +610,7 @@ OBI:0003314	mapping RNA-genome interactions assay			MARGI	A nuclear ligation ass
 OBI:0003321	venous blood microbiology assay				A blood microbiology assay that detects a microorganism in a venous blood specimen.	VEuPathDB		John Judkins				https://github.com/obi-ontology/obi/issues/1491	subclass		blood microbiology assay			venous blood specimen	organism										
 OBI:0003368	detection technique				An assay (A) that is part of another assay (B), where the target entities of A and B are disjoint, and the target entity of A is a proxy for the target of assay B.	OBI	Using a radioactivity detection assay as part of a tritiated thymidine incorporation assay to determine the degree to which cells are replicating by detecting radioactivity of tritiated thymidine, where radioactivity of tritiated thymidine in a cell is a proxy for cells that were actively replicating.	Bjoern Peters|Hector Guzman-Orozco				https://github.com/obi-ontology/obi/issues/1488	subclass		assay														'part of' some assay
 OBI:0003381	placental blood microbiology assay				A blood microbiology assay that detects microorganisms in a placental blood specimen.	VEuPathDB		John Judkins				https://github.com/obi-ontology/obi/issues/1297	subclass		blood microbiology assay			placental blood specimen											
+OBI:0003412	linked-read sequencing assay	linked-read sequencing assay			A DNA sequencing assay that uses microfluidics to partition and barcode high molecular weight DNA such that short reads derived from fragments of the large piece of DNA can be assembled within the context of the high molecular weight piece of DNA they are derived from, facilitating the use of short read data to sequence and assemble large genomes.	Michelle Giglio		Michelle Giglio|Sebastian Duesing			CFDE	https://github.com/obi-ontology/obi/issues/1559	subclass		DNA sequencing assay									high molecular weight DNA extract					
 OBI:0003418	antigen specific antibodies in blood assay				An antigen specific antibodies assay that has a blood specimen as evaluant.	VEuPathDB		John Judkins ORCID:0000-0001-6595-0902			VEuPathDB	https://github.com/obi-ontology/obi/issues/1526	subclass		antigen specific antibodies assay			blood specimen											
 OBI:0003419	antigen specific antibodies in milk assay				An antigen specific antibodies assay that has a milk specimen as evaluant.	VEuPathDB		John Judkins ORCID:0000-0001-6595-0902			VEuPathDB	https://github.com/obi-ontology/obi/issues/1526	subclass		antigen specific antibodies assay			milk specimen											
 OBI:0003422	enzymatic activity level assay				An assay in which the level of catalytic activity of an enzyme is determined.			James A. Overton					subclass		assay											catalytic activity