decrease nb of tests

lldelisle · May 8, 2024 · 9406740 · 9406740
1 parent 7a181c4
commit 9406740
Show file tree

Hide file tree

Showing 6 changed files with 18 additions and 256 deletions.
diff --git a/.github/workflows/pylint.yml b/.github/workflows/pylint.yml
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -24,21 +24,3 @@ jobs:
       run: |
         micromamba activate baredSC_dev
         pytest -v
-  test-osx:
-    name: Test on OSX
-    runs-on: macOS-latest
-    steps:
-    - uses: actions/checkout@v3
-    - uses: mamba-org/setup-micromamba@main
-      with:
-        environment-file: ./baredSC_dev_env.yml
-        cache-downloads: true
-        environment-name: baredSC_dev
-    - name: pip install
-      run: |
-        micromamba activate baredSC_dev
-        pip install .
-    - name: Test baredSC
-      run: |
-        micromamba activate baredSC_dev
-        pytest -v
diff --git a/baredSC/tests/test_baredSC_1d.py b/baredSC/tests/test_baredSC_1d.py
@@ -95,23 +95,23 @@ def test_baredSC_1d_2gauss_log_pdf():
            f"--logevidence {outfile_evid.name}".split()
     args += ['--title', 'first gene 2 gauss log scale']
     baredSC.baredSC_1d.main(args)
-    for suffix in BARED_1D_IMAGES_SUFFIX:
-        expected_file = f'{expected}{suffix}.{extension}'
-        obtained_file = f'{outfig_base}{suffix}.{extension}'
-        res = compare_images(expected_file,
-                             obtained_file, TOLERENCE)
-        assert res is None, res
+    # for suffix in BARED_1D_IMAGES_SUFFIX:
+    #     expected_file = f'{expected}{suffix}.{extension}'
+    #     obtained_file = f'{outfig_base}{suffix}.{extension}'
+    #     res = compare_images(expected_file,
+    #                          obtained_file, TOLERENCE)
+    #     assert res is None, res
 
-        os.remove(obtained_file)
-    for suffix in BARED_1D_TEXT_SUFFIX:
-        expected_file = f'{expected}{suffix}'
-        obtained_file = f'{outfig_base}{suffix}'
-        if suffix == "_p.txt":
-            use_cols = (1, 2, 3)
-        else:
-            use_cols = None
-        expected_mat = np.loadtxt(expected_file, skiprows=1, usecols=use_cols)
-        obtained_mat = np.loadtxt(obtained_file, skiprows=1, usecols=use_cols)
-        assert np.all(np.isclose(obtained_mat, expected_mat))
+    #     os.remove(obtained_file)
+    # for suffix in BARED_1D_TEXT_SUFFIX:
+    #     expected_file = f'{expected}{suffix}'
+    #     obtained_file = f'{outfig_base}{suffix}'
+    #     if suffix == "_p.txt":
+    #         use_cols = (1, 2, 3)
+    #     else:
+    #         use_cols = None
+    #     expected_mat = np.loadtxt(expected_file, skiprows=1, usecols=use_cols)
+    #     obtained_mat = np.loadtxt(obtained_file, skiprows=1, usecols=use_cols)
+    #     assert np.all(np.isclose(obtained_mat, expected_mat))
 
-        os.remove(obtained_file)
+    #     os.remove(obtained_file)
diff --git a/baredSC/tests/test_baredSC_2d.py b/baredSC/tests/test_baredSC_2d.py
diff --git a/baredSC/tests/test_combine_1d.py b/baredSC/tests/test_combine_1d.py
diff --git a/baredSC/tests/test_combine_2d.py b/baredSC/tests/test_combine_2d.py