fixes bug

lifebit-ai · Nov 20, 2023 · 502bb77 · 502bb77
1 parent b89afe1
commit 502bb77
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Showing 3 changed files with 3 additions and 2 deletions.
diff --git a/conf/data/data.config b/conf/data/data.config
@@ -1,6 +1,6 @@
 // If there is any data that needs to be included in the config, it should be placed here using "${params.reference_data_bucket}/path/to/data"
 params {
-    exomiser_profile{
+    exomiser_data_profile{
         'test'{
             data_bundle = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/hg38"
             exomiser_phenotype_data = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/2102_phenotype"

diff --git a/main.nf b/main.nf
@@ -128,7 +128,7 @@ ch_combined = ch_vcf_paths2.join(ch_to_join, by: 0).view()
 ---------------------------------------------------*/
 
 if (!params.data_bundle && params.exomiser_profile_files){
-    exomiser_data=params.exomiser_profile[params.exomiser_profile_files].data_bundle
+    exomiser_data=params.exomiser_data_profile[params.exomiser_profile_files].data_bundle
     Channel.fromPath("${params.exomiser_data}")
             .set{ch_exomiser_data }
 }else{

diff --git a/nextflow.config b/nextflow.config
@@ -94,6 +94,7 @@ profiles {
 }
 
 includeConfig 'conf/resources.config'
+includeConfig 'conf/data/data.config'
 
 process {
   echo = params.echo