changed param name

lifebit-ai · Nov 20, 2023 · 4171612 · 4171612
1 parent c9fb9c9
commit 4171612
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/conf/data/data.config b/conf/data/data.config
@@ -2,13 +2,13 @@
 params {
     exomiser_profile{
         'test'{
-            exomiser_data = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/hg38"
+            data_bundle = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/hg38"
             exomiser_phenotype_data = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/2102_phenotype"
             cadd_snvs = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/cadd_snvs"
             phenix_data = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/phenix"
         }
         'full'{
-            exomiser_data   = "${params.reference_data_bucket}/pipelines/exomiser-data-bundle"
+            data_bundle   = "${params.reference_data_bucket}/pipelines/exomiser-data-bundle"
         }
     }
 

diff --git a/main.nf b/main.nf
@@ -132,7 +132,7 @@ if(params.exomiser_data){
           .set{ch_exomiser_data }
           }
 else{
-    exomiser_data=params.exomiser_profile[params.params.exomiser_profile_files].exomiser_data
+    exomiser_data=params.exomiser_profile[params.params.exomiser_profile_files].data_bundle
     Channel.fromPath("${params.exomiser_data}")
             .set{ch_exomiser_data }
 

diff --git a/nextflow.config b/nextflow.config
@@ -24,7 +24,7 @@ params {
   sample_name = null
   config = 'conf/executors/standard.config'
   exomiser_profile_files = 'full' // 'test' for small mock data, 'full' for full data (120GB)
-  exomiser_data = null
+  data_bundle = null
   exomiser_phenotype_data = null
   cadd_snvs = null
   phenix_data = null