Ready for v0.5.0

kusterlab · Oct 28, 2023 · a2170a2 · a2170a2
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diff --git a/CHANGELOG b/CHANGELOG
@@ -1,8 +1,14 @@
-vx.x.x
+v0.5.0
 - Added support for proteases that cleave before an amino acid, e.g. Asp-N, Lys-N
 - Fix for empty score field in evidence file
 - Add better detection of maxquant evidence files (#7)
 - Added support for combining evidence files with different proteases
+- Updated GUI to support different digestion parameters per evidence file
+- Fix log levels in GUI
+- Added example scripts and notebook for book chapter analysis
+- Add check for shared peptides to protein groups that were filtered out because they had no reliable peptides
+- Change peptide count to use score cutoff for peptide FDR instead of protein FDR
+- Improved log messages
 
 v0.4.0
 - Removed proteins without any PSMs below the FDR threshold from protein groups output. Setting the new `--keep_all_proteins` flag reverts to the old behavior.

diff --git a/data/book_chapter/coon_analysis.ipynb b/data/book_chapter/coon_analysis.ipynb
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "picked_group_fdr"
-version = "0.4.0"
+version = "0.5.0"
 description = "Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments"
 authors = ["Matthew The <[email protected]>"]
 license= "Apache-2.0"