Merge pull request #41 from kaitj/maint/mp2rage

Remove .bval and .bvec files from anat (mp2rage)
khanlab · Mar 1, 2024 · 8a8d342 · 8a8d342
2 parents 9310e5c + 1144045
commit 8a8d342
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/tar2bids b/tar2bids
@@ -465,6 +465,9 @@ rm -f $output_dir/*/*_scans.tsv $output_dir/*/*/*_scans.tsv
 rm -f $output_dir/*/fmap/*.bval $output_dir/*/*/fmap/*.bval
 rm -f $output_dir/*/fmap/*.bvec $output_dir/*/*/fmap/*.bvec
 
+# remove .bval and .bvec files from anat (dcm2niix picking up header suggesting MP2RAGE is diffusion)
+rm -f $output_dir/*/anat/*.bval $output_dir/*/*/anat/*.bval
+rm -f $output_dir/*/anat/*.bvec $output_dir/*/*/anat/*.bvec
 
 if [ "$do_deface" = "1" ]
 then