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0.8.1
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Karl5766 committed Dec 10, 2024
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2 changes: 1 addition & 1 deletion docs/GettingStarted/beta_amyloid_plaque_detection.rst
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Below is a figure illustrating an overview of the pipeline processing the image volume to a list of centroids:

.. figure:: cvpl_tools/docs/assets/image_to_list_of_centroids.png
.. figure:: ../assets/image_to_list_of_centroids.png
:alt: Slice of mouse brain, unsegmented

pipeline overview
4 changes: 2 additions & 2 deletions docs/GettingStarted/nnunet.rst
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these metrics are best summarized as IOU or DICE scores. We look at an example segmentation below.

.. figure:: cvpl_tools/docs/assets/mb_unmasked.png
.. figure:: ../assets/mb_unmasked.png
:alt: Slice of mouse brain, unsegmented

Slice of the mouse brain, not annotated (without negative masking)

.. figure:: cvpl_tools/docs/assets/mb_masked.png
.. figure:: ../assets/mb_masked.png
:alt: Slice of mouse brain, negative masked

Slice of the mouse brain, annotated (with negative masking)
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2 changes: 1 addition & 1 deletion docs/conf.py
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project = 'cvpl_tools'
copyright = '2024, KarlHanUW'
author = 'KarlHanUW'
release = '0.7.3'
release = '0.8.1'

# -- General configuration ---------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
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2 changes: 1 addition & 1 deletion pyproject.toml
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[tool.poetry]
name = "cvpl-tools"
version = "0.8.0"
version = "0.8.1"
description = "A Python package for utilities and classes related to the file I/O, dataset record keeping and visualization for image processing and computer vision."
authors = ["Karl5766 <[email protected]>"]
license = "MIT"
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