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linx v2.0 release candidate 1

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@hmftools-release-bot hmftools-release-bot released this 25 Nov 00:44
· 259 commits to master since this release

Functional

  • write inexact homology to germline disruption file
  • germline report DELs and DUPs in complex clusters if < 3M in length
  • use JCN as last factor in in fusion priority

Technical

  • compatible with Esvee, does not support Gridss
  • visualiser: set white background for chr band and fusions
  • visualiser: limit plot SV count to 2K, can override with 'max_plot_svs', zero allows any count