Updating workflows/bacterial_genomics/amr_gene_detection from 1.1.5 to 1.1.6 #642
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mvdbeek
approved these changes
Jan 9, 2025
Hello, I need to check if the Tooldistillator tool is compatible with the new version of StarAMR (maybe I need to improve the code). And I think some arguments need to be changed in the workflow. |
bebatut
reviewed
Jan 20, 2025
| @@ -140,7 +140,7 @@ | |||
| }, | |||
| "4": { | |||
| "annotation": "staramr_amr_genes", | |||
| "content_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1", | |||
| "content_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0", | |||
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| "content_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0", | |
| "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/staramr/staramr_search/0.11.0+galaxy0", |
bebatut
reviewed
Jan 20, 2025
| ## [1.1.6] 2024-12-23 | ||
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| ### Automatic update | ||
| - `toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0` |
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| - `toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0` | |
| - `toolshed.g2.bx.psu.edu/repos/iuc/staramr/staramr_search/0.10.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/staramr/staramr_search/0.11.0+galaxy0` |
bebatut
reviewed
Jan 20, 2025
| @@ -304,15 +304,15 @@ | |||
| "output_name": "summary" | |||
| } | |||
| }, | |||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1", | |||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0", | |||
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Suggested change
| "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0", | |
| "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/staramr/staramr_search/0.11.0+galaxy0", |
| "tool_shed_repository": { | ||
| "changeset_revision": "3b22de20bd4b", | ||
| "changeset_revision": "3548a93b39c1", |
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| "changeset_revision": "3548a93b39c1", | |
| "changeset_revision": "6edfb4b6db85", |
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Hello! This is an automated update of the following workflow: workflows/bacterial_genomics/amr_gene_detection. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.
By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:
toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1should be updated totoolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0The workflow release number has been updated from 1.1.5 to 1.1.6.
If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
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