fix: run app without docker (#47)

Dockerfile

@@ -19,4 +19,6 @@ RUN cd /app \
   && chmod g+w /app/cloud_registry/api/ \
   && pip install yq
 
-CMD ["bash", "-c", "cd /app/cloud_registry; python app.py"]
+WORKDIR /app
+
+CMD ["python", "cloud_registry/app.py"]

cloud_registry/app.py

@@ -1,13 +1,21 @@
+from pathlib import Path
+import logging
 from foca import Foca
 from foca.security.auth import validate_token  # noqa: F401
 
 from cloud_registry.ga4gh.registry.service_info import RegisterServiceInfo
 
+logger = logging.getLogger(__name__)
+
 
 def main():
+    config_path = Path(__file__).parent / "config.yaml"
+    if not config_path.exists():
+        logger.error(f"Config file not found: {config_path}")
+        raise FileNotFoundError(f"Config file not found: {config_path}")
     # create app object
     foca = Foca(
-        config_file="config.yaml",
+        config_file=config_path,
         custom_config_model="service_models.custom_config.CustomConfig",
     )
     app = foca.create_app()

cloud_registry/config.yaml

@@ -53,9 +53,9 @@ db:
 api:
     specs:
         - path:
-            - api/20201108.11d2c12.service-info.yaml
-            - api/20201108.e0358db.openapi.yaml
-            - api/additions.openapi.yaml
+            - cloud_registry/api/20201108.11d2c12.service-info.yaml
+            - cloud_registry/api/20201108.e0358db.openapi.yaml
+            - cloud_registry/api/additions.openapi.yaml
           add_operation_fields:
               x-openapi-router-controller: ga4gh.registry.server
           add_security_fields:

docker-compose.yaml

@@ -9,7 +9,6 @@ services:
         restart: unless-stopped
         links:
             - mongodb
-        command: bash -c "cd /app/cloud_registry; python app.py"
         ports:
             - "8080:8080"