Merge pull request #178 from davidycliao/dependabot/pip/torch-2.4.1 #402

	name: R-ubuntu

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	R-CMD-check:
	runs-on: ubuntu-20.04

	strategy:
	matrix:
	r-version: ['4.3.2', '4.2.0', '4.2.1']

	steps:
	- uses: actions/checkout@v3

	- name: Cache R dependencies
	uses: actions/cache@v2
	with:
	path: ~/R/x86_64-pc-linux-gnu-library/
	key: ${{ runner.os }}-r-${{ hashFiles('**/renv.lock') }}
	restore-keys: ${{ runner.os }}-r-

	- name: Setup R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Restore R environment
	run: \|
	Rscript -e "if (!requireNamespace('renv', quietly = TRUE)) install.packages('renv')"
	Rscript -e "renv::restore()"

	- name: Install additional R packages
	run: Rscript -e 'install.packages(c("knitr", "rmarkdown", "lsa", "purrr", "ggplot2"))'
	shell: bash

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.10.x'

	- name: Install Python virtualenv
	run: pip install virtualenv

	- name: Create Python virtual environment
	run: virtualenv flair_env

	- name: Install Python dependencies in virtual environment
	run: \|
	source flair_env/bin/activate
	pip install --upgrade pip
	pip install scipy==1.12.0 # test
	pip install flair

	- name: Remove Python cache files
	run: find . -name '*.pyc' -delete

	- name: Check R environment status
	run: Rscript -e "renv::status()"

	- name: Synchronize R environment
	run: Rscript -e "renv::sync()"

	- name: Check R package (with virtual environment)
	run: \|
	source flair_env/bin/activate
	R CMD build . --no-build-vignettes
	R CMD check *tar.gz --no-build-vignettes --no-manual --no-examples
	shell: bash

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