From 9711f1e9340058e3c453724543c8cf61f792d2ac Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 26 Dec 2023 00:56:10 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 3d286cb11c5d1f89c4b1e9c02af2de630ce5b8b6
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-12-21 12:14:34 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : a4d7b637e4ba45f0645f7cfea15da19a31864068
Branch  : main
Author  : Trevor Keller <trevor.keller@nist.gov>
Time    : 2023-12-21 12:13:20 +0000
Message : Merge pull request #12 from carpentries-incubator/cluster_snakefiles

Cluster snakefiles
---
 404.html                           |  4 ++--
 CODE_OF_CONDUCT.html               |  2 +-
 LICENSE.html                       |  2 +-
 aio.html                           | 12 ++++++------
 amdahl_foundation.html             |  4 ++--
 amdahl_snakemake.html              |  2 +-
 images.html                        |  4 ++--
 index.html                         |  4 ++--
 instructor-notes.html              |  4 ++--
 instructor/404.html                |  4 ++--
 instructor/CODE_OF_CONDUCT.html    |  2 +-
 instructor/LICENSE.html            |  2 +-
 instructor/aio.html                | 12 ++++++------
 instructor/amdahl_foundation.html  |  4 ++--
 instructor/amdahl_snakemake.html   |  2 +-
 instructor/images.html             |  4 ++--
 instructor/index.html              |  4 ++--
 instructor/instructor-notes.html   |  4 ++--
 instructor/key-points.html         |  4 ++--
 instructor/profiles.html           |  4 ++--
 instructor/reference.html          |  2 +-
 instructor/snakemake_cluster.html  |  4 ++--
 instructor/snakemake_multiple.html |  2 +-
 instructor/snakemake_profiles.html |  4 ++--
 instructor/snakemake_single.html   |  4 ++--
 key-points.html                    |  4 ++--
 pkgdown.yml                        |  2 +-
 profiles.html                      |  4 ++--
 reference.html                     |  2 +-
 snakemake_cluster.html             |  4 ++--
 snakemake_multiple.html            |  2 +-
 snakemake_profiles.html            |  4 ++--
 snakemake_single.html              |  4 ++--
 33 files changed, 63 insertions(+), 63 deletions(-)

diff --git a/404.html b/404.html
index 970c1e2..98567b4 100644
--- a/404.html
+++ b/404.html
@@ -318,8 +318,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 3481855..d3a633a 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -340,7 +340,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index efd24b4..4f3c0fa 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -391,7 +391,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 6b39b67..4b681d9 100644
--- a/aio.html
+++ b/aio.html
@@ -425,7 +425,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh  # serial job     ~ 25 sec
 [user@login1 ~]$ sbatch amdahl_2.sh  # 2-way parallel ~ 20 sec
@@ -526,7 +526,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -737,7 +737,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use the “mpi” option in the resource block of the Snakemake rule, and
 specify the number of tasks. This will be mapped to the <code>-n</code>
@@ -840,7 +840,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The profile files can have variables taken from the rule file, and in
 particular can refer to resources from a rule.</p>
@@ -1012,8 +1012,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/amdahl_foundation.html b/amdahl_foundation.html
index 7dc1a96..a32131e 100644
--- a/amdahl_foundation.html
+++ b/amdahl_foundation.html
@@ -387,7 +387,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh  # serial job     ~ 25 sec
 [user@login1 ~]$ sbatch amdahl_2.sh  # 2-way parallel ~ 20 sec
@@ -474,7 +474,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/amdahl_foundation.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/amdahl_snakemake.html b/amdahl_snakemake.html
index 64500ac..544df4d 100644
--- a/amdahl_snakemake.html
+++ b/amdahl_snakemake.html
@@ -420,7 +420,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/amdahl_snakemake.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 30e8b8d..6c465cc 100644
--- a/images.html
+++ b/images.html
@@ -358,8 +358,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 4425628..97f8105 100644
--- a/index.html
+++ b/index.html
@@ -386,8 +386,8 @@ <h4 class="accordion-header" id="headingSolution3">Linux</h4>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 47cf57b..b8a70b1 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -360,8 +360,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 18c54f5..28fff6a 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -318,8 +318,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 2955e2f..4513bab 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -342,7 +342,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 362d577..ce2f9f2 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -393,7 +393,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 2877431..1c20708 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -428,7 +428,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh  # serial job     ~ 25 sec
 [user@login1 ~]$ sbatch amdahl_2.sh  # 2-way parallel ~ 20 sec
@@ -530,7 +530,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -743,7 +743,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use the “mpi” option in the resource block of the Snakemake rule, and
 specify the number of tasks. This will be mapped to the <code>-n</code>
@@ -847,7 +847,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The profile files can have variables taken from the rule file, and in
 particular can refer to resources from a rule.</p>
@@ -1020,8 +1020,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/amdahl_foundation.html b/instructor/amdahl_foundation.html
index 3174251..b9dc0db 100644
--- a/instructor/amdahl_foundation.html
+++ b/instructor/amdahl_foundation.html
@@ -389,7 +389,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh  # serial job     ~ 25 sec
 [user@login1 ~]$ sbatch amdahl_2.sh  # 2-way parallel ~ 20 sec
@@ -476,7 +476,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/amdahl_foundation.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/amdahl_snakemake.html b/instructor/amdahl_snakemake.html
index d1c7118..5e3f671 100644
--- a/instructor/amdahl_snakemake.html
+++ b/instructor/amdahl_snakemake.html
@@ -422,7 +422,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/amdahl_snakemake.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 581c296..9107ea2 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -360,8 +360,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index db2fd98..2e33763 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -451,8 +451,8 @@ <h4 class="accordion-header" id="headingSolution3">Linux</h4>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 7b79e3e..63c5f34 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -368,8 +368,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 5e4c785..4d956d4 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -384,8 +384,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index a6c0dfa..6ba9f92 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -293,8 +293,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index 54c0595..64cfeb9 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -335,7 +335,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/snakemake_cluster.html b/instructor/snakemake_cluster.html
index 1fbbda6..8c28cad 100644
--- a/instructor/snakemake_cluster.html
+++ b/instructor/snakemake_cluster.html
@@ -338,7 +338,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use the “mpi” option in the resource block of the Snakemake rule, and
 specify the number of tasks. This will be mapped to the <code>-n</code>
@@ -423,7 +423,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/snakemake_multiple.html b/instructor/snakemake_multiple.html
index 1c8d181..3ddc008 100644
--- a/instructor/snakemake_multiple.html
+++ b/instructor/snakemake_multiple.html
@@ -434,7 +434,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_multiple.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/snakemake_profiles.html b/instructor/snakemake_profiles.html
index 769d1d4..f17de77 100644
--- a/instructor/snakemake_profiles.html
+++ b/instructor/snakemake_profiles.html
@@ -343,7 +343,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The profile files can have variables taken from the rule file, and in
 particular can refer to resources from a rule.</p>
@@ -427,7 +427,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_profiles.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/snakemake_single.html b/instructor/snakemake_single.html
index dde701a..050fa97 100644
--- a/instructor/snakemake_single.html
+++ b/instructor/snakemake_single.html
@@ -339,7 +339,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -428,7 +428,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_single.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 4ebed5a..97a87b3 100644
--- a/key-points.html
+++ b/key-points.html
@@ -382,8 +382,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index cff7740..15245c8 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2023-12-21T12:14Z
+last_built: 2023-12-26T00:56Z
 
diff --git a/profiles.html b/profiles.html
index dafeabe..dd7ae1a 100644
--- a/profiles.html
+++ b/profiles.html
@@ -293,8 +293,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2023-12-21",
-  "datePublished": "2023-12-21"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 020d460..c932807 100644
--- a/reference.html
+++ b/reference.html
@@ -333,7 +333,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/snakemake_cluster.html b/snakemake_cluster.html
index 97f0fb9..5a2874f 100644
--- a/snakemake_cluster.html
+++ b/snakemake_cluster.html
@@ -336,7 +336,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use the “mpi” option in the resource block of the Snakemake rule, and
 specify the number of tasks. This will be mapped to the <code>-n</code>
@@ -421,7 +421,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/snakemake_multiple.html b/snakemake_multiple.html
index b958f66..5827bca 100644
--- a/snakemake_multiple.html
+++ b/snakemake_multiple.html
@@ -432,7 +432,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_multiple.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/snakemake_profiles.html b/snakemake_profiles.html
index 5c5559a..e486396 100644
--- a/snakemake_profiles.html
+++ b/snakemake_profiles.html
@@ -341,7 +341,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The profile files can have variables taken from the rule file, and in
 particular can refer to resources from a rule.</p>
@@ -425,7 +425,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_profiles.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/snakemake_single.html b/snakemake_single.html
index b1859bb..8c93214 100644
--- a/snakemake_single.html
+++ b/snakemake_single.html
@@ -337,7 +337,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -426,7 +426,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_single.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2023-12-21"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>