From 898f5421c4810688753e2e526a7830b90ab36d63 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 16 Jan 2024 00:59:26 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 3d286cb11c5d1f89c4b1e9c02af2de630ce5b8b6
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-12-21 12:14:34 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : a4d7b637e4ba45f0645f7cfea15da19a31864068
Branch  : main
Author  : Trevor Keller <trevor.keller@nist.gov>
Time    : 2023-12-21 12:13:20 +0000
Message : Merge pull request #12 from carpentries-incubator/cluster_snakefiles

Cluster snakefiles
---
 404.html                           |  4 ++--
 CODE_OF_CONDUCT.html               |  2 +-
 LICENSE.html                       |  2 +-
 aio.html                           | 10 +++++-----
 amdahl_foundation.html             |  2 +-
 amdahl_snakemake.html              |  4 ++--
 images.html                        |  4 ++--
 index.html                         | 10 +++++-----
 instructor-notes.html              |  4 ++--
 instructor/404.html                |  4 ++--
 instructor/CODE_OF_CONDUCT.html    |  2 +-
 instructor/LICENSE.html            |  2 +-
 instructor/aio.html                | 10 +++++-----
 instructor/amdahl_foundation.html  |  2 +-
 instructor/amdahl_snakemake.html   |  4 ++--
 instructor/images.html             |  4 ++--
 instructor/index.html              | 10 +++++-----
 instructor/instructor-notes.html   |  4 ++--
 instructor/key-points.html         |  4 ++--
 instructor/profiles.html           |  4 ++--
 instructor/reference.html          |  2 +-
 instructor/snakemake_cluster.html  |  2 +-
 instructor/snakemake_multiple.html |  4 ++--
 instructor/snakemake_profiles.html |  2 +-
 instructor/snakemake_single.html   |  4 ++--
 key-points.html                    |  4 ++--
 pkgdown.yml                        |  2 +-
 profiles.html                      |  4 ++--
 reference.html                     |  2 +-
 snakemake_cluster.html             |  2 +-
 snakemake_multiple.html            |  4 ++--
 snakemake_profiles.html            |  2 +-
 snakemake_single.html              |  4 ++--
 33 files changed, 65 insertions(+), 65 deletions(-)

diff --git a/404.html b/404.html
index d6768ef..758ad90 100644
--- a/404.html
+++ b/404.html
@@ -318,8 +318,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 50666d9..2056af1 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -340,7 +340,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 9c7838e..4e7e554 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -391,7 +391,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 7c6f15f..d8f0f08 100644
--- a/aio.html
+++ b/aio.html
@@ -526,7 +526,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -634,7 +634,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -937,7 +937,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Arbitrary parameters are still finite, so you could just generate a
 flat list of all the combinations, and iterate over that. Or you could
@@ -1012,8 +1012,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/amdahl_foundation.html b/amdahl_foundation.html
index b1e5b18..d93c6db 100644
--- a/amdahl_foundation.html
+++ b/amdahl_foundation.html
@@ -474,7 +474,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/amdahl_foundation.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/amdahl_snakemake.html b/amdahl_snakemake.html
index 8b408a7..c479066 100644
--- a/amdahl_snakemake.html
+++ b/amdahl_snakemake.html
@@ -336,7 +336,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Arbitrary parameters are still finite, so you could just generate a
 flat list of all the combinations, and iterate over that. Or you could
@@ -420,7 +420,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/amdahl_snakemake.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index c3a2a06..2aefb6e 100644
--- a/images.html
+++ b/images.html
@@ -358,8 +358,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index d961510..e549c5b 100644
--- a/index.html
+++ b/index.html
@@ -302,7 +302,7 @@ <h3 class="callout-title">Details<a class="anchor" aria-label="anchor" href="#de
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Windows</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Use PuTTY</p>
 </div>
@@ -314,7 +314,7 @@ <h4 class="accordion-header" id="headingSolution1">Windows</h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">MacOS</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>Use Terminal.app</p>
 </div>
@@ -326,7 +326,7 @@ <h4 class="accordion-header" id="headingSolution2">MacOS</h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Linux</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>Use Terminal</p>
 </div>
@@ -386,8 +386,8 @@ <h4 class="accordion-header" id="headingSolution3">Linux</h4>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index ada1038..403f56d 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -360,8 +360,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 2523339..65a229f 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -318,8 +318,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index ecb9b2c..3acb9b9 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -342,7 +342,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index dce9845..a486900 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -393,7 +393,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index b3b7282..7a3a996 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -530,7 +530,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -639,7 +639,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -945,7 +945,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Arbitrary parameters are still finite, so you could just generate a
 flat list of all the combinations, and iterate over that. Or you could
@@ -1020,8 +1020,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/amdahl_foundation.html b/instructor/amdahl_foundation.html
index 2a1561f..0aea3ec 100644
--- a/instructor/amdahl_foundation.html
+++ b/instructor/amdahl_foundation.html
@@ -476,7 +476,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/amdahl_foundation.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/amdahl_snakemake.html b/instructor/amdahl_snakemake.html
index 75937d9..0142061 100644
--- a/instructor/amdahl_snakemake.html
+++ b/instructor/amdahl_snakemake.html
@@ -338,7 +338,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Arbitrary parameters are still finite, so you could just generate a
 flat list of all the combinations, and iterate over that. Or you could
@@ -422,7 +422,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/amdahl_snakemake.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 56205a1..c2abc1e 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -360,8 +360,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 0976613..8c3375d 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -367,7 +367,7 @@ <h3 class="callout-title">Details<a class="anchor" aria-label="anchor" href="#de
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Windows</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Use PuTTY</p>
 </div>
@@ -379,7 +379,7 @@ <h4 class="accordion-header" id="headingSolution1">Windows</h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">MacOS</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>Use Terminal.app</p>
 </div>
@@ -391,7 +391,7 @@ <h4 class="accordion-header" id="headingSolution2">MacOS</h4>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Linux</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>Use Terminal</p>
 </div>
@@ -451,8 +451,8 @@ <h4 class="accordion-header" id="headingSolution3">Linux</h4>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index bbce1a3..bdeea28 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -368,8 +368,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 5edfd15..81c7859 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -384,8 +384,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index d6280e2..b47ee03 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -293,8 +293,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index aa48c2d..ee6710e 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -335,7 +335,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/snakemake_cluster.html b/instructor/snakemake_cluster.html
index e06efc4..c71636b 100644
--- a/instructor/snakemake_cluster.html
+++ b/instructor/snakemake_cluster.html
@@ -423,7 +423,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/snakemake_multiple.html b/instructor/snakemake_multiple.html
index 8b1f8f9..6c29006 100644
--- a/instructor/snakemake_multiple.html
+++ b/instructor/snakemake_multiple.html
@@ -344,7 +344,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -434,7 +434,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_multiple.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/snakemake_profiles.html b/instructor/snakemake_profiles.html
index a661afb..96b7adb 100644
--- a/instructor/snakemake_profiles.html
+++ b/instructor/snakemake_profiles.html
@@ -427,7 +427,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_profiles.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/instructor/snakemake_single.html b/instructor/snakemake_single.html
index 9d422fa..e5d2112 100644
--- a/instructor/snakemake_single.html
+++ b/instructor/snakemake_single.html
@@ -339,7 +339,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -428,7 +428,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_single.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index bbb5899..4aa610a 100644
--- a/key-points.html
+++ b/key-points.html
@@ -382,8 +382,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index fa5a0c6..8ba65ff 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-01-09T00:59Z
+last_built: 2024-01-16T00:59Z
 
diff --git a/profiles.html b/profiles.html
index 7f3114b..6d99bc2 100644
--- a/profiles.html
+++ b/profiles.html
@@ -293,8 +293,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-01-09",
-  "datePublished": "2024-01-09"
+  "dateModified": "2024-01-16",
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 53cd974..fdc989d 100644
--- a/reference.html
+++ b/reference.html
@@ -333,7 +333,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/snakemake_cluster.html b/snakemake_cluster.html
index f830c0c..a0a12b9 100644
--- a/snakemake_cluster.html
+++ b/snakemake_cluster.html
@@ -421,7 +421,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/snakemake_multiple.html b/snakemake_multiple.html
index 8d5415a..5bd2037 100644
--- a/snakemake_multiple.html
+++ b/snakemake_multiple.html
@@ -342,7 +342,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -432,7 +432,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_multiple.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/snakemake_profiles.html b/snakemake_profiles.html
index f8eaaa0..1965494 100644
--- a/snakemake_profiles.html
+++ b/snakemake_profiles.html
@@ -425,7 +425,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_profiles.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>
diff --git a/snakemake_single.html b/snakemake_single.html
index 9524a5b..720190e 100644
--- a/snakemake_single.html
+++ b/snakemake_single.html
@@ -337,7 +337,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The rule does not get executed the second time. The Snakemake
 infrastructure is stateful, and knows that the required outputs are up
@@ -426,7 +426,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_single.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-01-09"
+  "datePublished": "2024-01-16"
 }
 
   </script><script>