From 3c8f4b5a116bb0010a54c23b8eec029f51767e98 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 5 Mar 2024 00:54:44 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 3d286cb11c5d1f89c4b1e9c02af2de630ce5b8b6
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-12-21 12:14:34 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : a4d7b637e4ba45f0645f7cfea15da19a31864068
Branch  : main
Author  : Trevor Keller <trevor.keller@nist.gov>
Time    : 2023-12-21 12:13:20 +0000
Message : Merge pull request #12 from carpentries-incubator/cluster_snakefiles

Cluster snakefiles
---
 404.html                           |  4 ++--
 CODE_OF_CONDUCT.html               |  2 +-
 LICENSE.html                       |  2 +-
 aio.html                           | 33 +++++++++++++++---------------
 amdahl_foundation.html             | 29 +++++++++++++-------------
 amdahl_snakemake.html              |  2 +-
 images.html                        |  4 ++--
 index.html                         |  4 ++--
 instructor-notes.html              |  4 ++--
 instructor/404.html                |  4 ++--
 instructor/CODE_OF_CONDUCT.html    |  2 +-
 instructor/LICENSE.html            |  2 +-
 instructor/aio.html                | 33 +++++++++++++++---------------
 instructor/amdahl_foundation.html  | 29 +++++++++++++-------------
 instructor/amdahl_snakemake.html   |  2 +-
 instructor/images.html             |  4 ++--
 instructor/index.html              |  4 ++--
 instructor/instructor-notes.html   |  4 ++--
 instructor/key-points.html         |  4 ++--
 instructor/profiles.html           |  4 ++--
 instructor/reference.html          |  2 +-
 instructor/snakemake_cluster.html  |  2 +-
 instructor/snakemake_multiple.html |  4 ++--
 instructor/snakemake_profiles.html |  2 +-
 instructor/snakemake_single.html   |  2 +-
 key-points.html                    |  4 ++--
 pkgdown.yml                        |  4 ++--
 profiles.html                      |  4 ++--
 reference.html                     |  2 +-
 snakemake_cluster.html             |  2 +-
 snakemake_multiple.html            |  4 ++--
 snakemake_profiles.html            |  2 +-
 snakemake_single.html              |  2 +-
 33 files changed, 104 insertions(+), 108 deletions(-)

diff --git a/404.html b/404.html
index e2da448..1bf5b1b 100644
--- a/404.html
+++ b/404.html
@@ -318,8 +318,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 0bc9b41..da302d8 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -340,7 +340,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 67be7fc..75980da 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -391,7 +391,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index d841864..311340e 100644
--- a/aio.html
+++ b/aio.html
@@ -352,13 +352,12 @@ <h3 class="card-title">Objectives</h3>
 resources. It’s called “amdahl”, named for Eugene Amdahl, a famous
 computer scientist who coined “Amdahl’s Law”, which is about the
 advantages and limitations of parallelism in code execution.</p>
-<div id="callout1" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div class="callout-inner">
-<h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#callout1"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title">Callout</h3>
 <div class="callout-content">
 <p><a href="https://en.wikipedia.org/wiki/Amdahl%27s_law" class="external-link">Amdahl’s
 Law</a> is a statement about how much benefit you can expect to get by
@@ -393,16 +392,16 @@ <h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#ca
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
-<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
-<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
-<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
-<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
-<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
-<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
-<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load Python</span>
-<span id="cb3-9"><a href="#cb3-9" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-10"><a href="#cb3-10" aria-hidden="true" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
+<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
+<span id="cb3-2"><a href="#cb3-2" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
+<span id="cb3-3"><a href="#cb3-3" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
+<span id="cb3-4"><a href="#cb3-4" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
+<span id="cb3-5"><a href="#cb3-5" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
+<span id="cb3-6"><a href="#cb3-6" tabindex="-1"></a></span>
+<span id="cb3-7"><a href="#cb3-7" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
+<span id="cb3-8"><a href="#cb3-8" tabindex="-1"></a><span class="ex">module</span> load Python</span>
+<span id="cb3-9"><a href="#cb3-9" tabindex="-1"></a></span>
+<span id="cb3-10"><a href="#cb3-10" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
 </div>
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh</code></pre>
 <div id="challenge1" class="callout challenge">
@@ -634,7 +633,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -1012,8 +1011,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/amdahl_foundation.html b/amdahl_foundation.html
index 4e8aec7..d5bb457 100644
--- a/amdahl_foundation.html
+++ b/amdahl_foundation.html
@@ -316,13 +316,12 @@ <h3 class="card-title">Objectives</h3>
 resources. It’s called “amdahl”, named for Eugene Amdahl, a famous
 computer scientist who coined “Amdahl’s Law”, which is about the
 advantages and limitations of parallelism in code execution.</p>
-<div id="callout1" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div class="callout-inner">
-<h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#callout1"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title">Callout</h3>
 <div class="callout-content">
 <p><a href="https://en.wikipedia.org/wiki/Amdahl%27s_law" class="external-link">Amdahl’s
 Law</a> is a statement about how much benefit you can expect to get by
@@ -355,16 +354,16 @@ <h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#ca
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
-<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
-<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
-<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
-<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
-<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
-<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
-<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load Python</span>
-<span id="cb3-9"><a href="#cb3-9" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-10"><a href="#cb3-10" aria-hidden="true" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
+<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
+<span id="cb3-2"><a href="#cb3-2" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
+<span id="cb3-3"><a href="#cb3-3" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
+<span id="cb3-4"><a href="#cb3-4" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
+<span id="cb3-5"><a href="#cb3-5" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
+<span id="cb3-6"><a href="#cb3-6" tabindex="-1"></a></span>
+<span id="cb3-7"><a href="#cb3-7" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
+<span id="cb3-8"><a href="#cb3-8" tabindex="-1"></a><span class="ex">module</span> load Python</span>
+<span id="cb3-9"><a href="#cb3-9" tabindex="-1"></a></span>
+<span id="cb3-10"><a href="#cb3-10" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
 </div>
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh</code></pre>
 <div id="challenge1" class="callout challenge">
@@ -474,7 +473,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/amdahl_foundation.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/amdahl_snakemake.html b/amdahl_snakemake.html
index e93e27c..9bb698c 100644
--- a/amdahl_snakemake.html
+++ b/amdahl_snakemake.html
@@ -420,7 +420,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/amdahl_snakemake.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 2f3f8a3..a3b6bdc 100644
--- a/images.html
+++ b/images.html
@@ -358,8 +358,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index eceaf13..705b97e 100644
--- a/index.html
+++ b/index.html
@@ -386,8 +386,8 @@ <h4 class="accordion-header" id="headingSolution3">Linux</h4>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index d0d425a..279a80f 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -360,8 +360,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 6a40c86..145c38d 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -318,8 +318,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/404.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 9cec4ea..99cad34 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -342,7 +342,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index d09e21e..f65f5da 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -393,7 +393,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/LICENSE.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 975b0e9..ffea57f 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -355,13 +355,12 @@ <h3 class="card-title">Objectives</h3>
 resources. It’s called “amdahl”, named for Eugene Amdahl, a famous
 computer scientist who coined “Amdahl’s Law”, which is about the
 advantages and limitations of parallelism in code execution.</p>
-<div id="callout1" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div class="callout-inner">
-<h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#callout1"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title">Callout</h3>
 <div class="callout-content">
 <p><a href="https://en.wikipedia.org/wiki/Amdahl%27s_law" class="external-link">Amdahl’s
 Law</a> is a statement about how much benefit you can expect to get by
@@ -396,16 +395,16 @@ <h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#ca
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
-<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
-<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
-<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
-<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
-<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
-<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
-<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load Python</span>
-<span id="cb3-9"><a href="#cb3-9" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-10"><a href="#cb3-10" aria-hidden="true" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
+<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
+<span id="cb3-2"><a href="#cb3-2" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
+<span id="cb3-3"><a href="#cb3-3" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
+<span id="cb3-4"><a href="#cb3-4" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
+<span id="cb3-5"><a href="#cb3-5" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
+<span id="cb3-6"><a href="#cb3-6" tabindex="-1"></a></span>
+<span id="cb3-7"><a href="#cb3-7" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
+<span id="cb3-8"><a href="#cb3-8" tabindex="-1"></a><span class="ex">module</span> load Python</span>
+<span id="cb3-9"><a href="#cb3-9" tabindex="-1"></a></span>
+<span id="cb3-10"><a href="#cb3-10" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
 </div>
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh</code></pre>
 <div id="challenge1" class="callout challenge">
@@ -639,7 +638,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -1020,8 +1019,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/aio.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/amdahl_foundation.html b/instructor/amdahl_foundation.html
index 64776df..3073671 100644
--- a/instructor/amdahl_foundation.html
+++ b/instructor/amdahl_foundation.html
@@ -318,13 +318,12 @@ <h3 class="card-title">Objectives</h3>
 resources. It’s called “amdahl”, named for Eugene Amdahl, a famous
 computer scientist who coined “Amdahl’s Law”, which is about the
 advantages and limitations of parallelism in code execution.</p>
-<div id="callout1" class="callout callout">
+<div id="callout1" class="callout">
 <div class="callout-square">
 <i class="callout-icon" data-feather="bell"></i>
 </div>
-<div class="callout-inner">
-<h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#callout1"></a>
-</h3>
+<div class="section level3 callout-title callout-inner">
+<h3 class="callout-title">Callout</h3>
 <div class="callout-content">
 <p><a href="https://en.wikipedia.org/wiki/Amdahl%27s_law" class="external-link">Amdahl’s
 Law</a> is a statement about how much benefit you can expect to get by
@@ -357,16 +356,16 @@ <h3 class="callout-title">Callout<a class="anchor" aria-label="anchor" href="#ca
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
 </h3>
-<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
-<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
-<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
-<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
-<span id="cb3-5"><a href="#cb3-5" aria-hidden="true" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
-<span id="cb3-6"><a href="#cb3-6" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-7"><a href="#cb3-7" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
-<span id="cb3-8"><a href="#cb3-8" aria-hidden="true" tabindex="-1"></a><span class="ex">module</span> load Python</span>
-<span id="cb3-9"><a href="#cb3-9" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb3-10"><a href="#cb3-10" aria-hidden="true" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
+<pre class="sourceCode bash" tabindex="0"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" tabindex="-1"></a><span class="co">#!/bin/bash</span></span>
+<span id="cb3-2"><a href="#cb3-2" tabindex="-1"></a><span class="co">#SBATCH -t 00:01          # max 1 minute</span></span>
+<span id="cb3-3"><a href="#cb3-3" tabindex="-1"></a><span class="co">#SBATCH -p smnodes        # max 4 cores</span></span>
+<span id="cb3-4"><a href="#cb3-4" tabindex="-1"></a><span class="co">#SBATCH -n 1              # use 1 core</span></span>
+<span id="cb3-5"><a href="#cb3-5" tabindex="-1"></a><span class="co">#SBATCH -o amdahl-np1.out # record result</span></span>
+<span id="cb3-6"><a href="#cb3-6" tabindex="-1"></a></span>
+<span id="cb3-7"><a href="#cb3-7" tabindex="-1"></a><span class="ex">module</span> load OpenMPI</span>
+<span id="cb3-8"><a href="#cb3-8" tabindex="-1"></a><span class="ex">module</span> load Python</span>
+<span id="cb3-9"><a href="#cb3-9" tabindex="-1"></a></span>
+<span id="cb3-10"><a href="#cb3-10" tabindex="-1"></a><span class="ex">mpirun</span> amdahl</span></code></pre>
 </div>
 <pre class="shell"><code>[user@login1 ~]$ sbatch amdahl_1.sh</code></pre>
 <div id="challenge1" class="callout challenge">
@@ -476,7 +475,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/amdahl_foundation.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/amdahl_snakemake.html b/instructor/amdahl_snakemake.html
index 486ee88..46d12c3 100644
--- a/instructor/amdahl_snakemake.html
+++ b/instructor/amdahl_snakemake.html
@@ -422,7 +422,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/amdahl_snakemake.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 3e2d94f..e49dc76 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -360,8 +360,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/images.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 0a55014..e52bf9a 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -451,8 +451,8 @@ <h4 class="accordion-header" id="headingSolution3">Linux</h4>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/index.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index bbc1434..8e15b3b 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -368,8 +368,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/instructor-notes.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index d922410..a69c9b7 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -384,8 +384,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 7db0705..6df7361 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -293,8 +293,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index a10dab7..7eca8ee 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -335,7 +335,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/snakemake_cluster.html b/instructor/snakemake_cluster.html
index fa7c564..7916a0b 100644
--- a/instructor/snakemake_cluster.html
+++ b/instructor/snakemake_cluster.html
@@ -423,7 +423,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/snakemake_multiple.html b/instructor/snakemake_multiple.html
index 4e96f69..f40e8e1 100644
--- a/instructor/snakemake_multiple.html
+++ b/instructor/snakemake_multiple.html
@@ -344,7 +344,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -434,7 +434,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_multiple.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/snakemake_profiles.html b/instructor/snakemake_profiles.html
index d4457a5..472cc29 100644
--- a/instructor/snakemake_profiles.html
+++ b/instructor/snakemake_profiles.html
@@ -427,7 +427,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_profiles.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/instructor/snakemake_single.html b/instructor/snakemake_single.html
index a4cceb1..35d9aa4 100644
--- a/instructor/snakemake_single.html
+++ b/instructor/snakemake_single.html
@@ -428,7 +428,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/instructor/snakemake_single.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 9703294..fec4f50 100644
--- a/key-points.html
+++ b/key-points.html
@@ -382,8 +382,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/key-points.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index fba2abc..517ae88 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -1,6 +1,6 @@
-pandoc: 2.19.2
+pandoc: 3.1.11
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-02-27T01:00Z
+last_built: 2024-03-05T00:54Z
 
diff --git a/profiles.html b/profiles.html
index 347fdbf..e558d40 100644
--- a/profiles.html
+++ b/profiles.html
@@ -293,8 +293,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/profiles.html",
   "dateCreated": "2023-04-19",
-  "dateModified": "2024-02-27",
-  "datePublished": "2024-02-27"
+  "dateModified": "2024-03-05",
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index e15e5f5..d6185b3 100644
--- a/reference.html
+++ b/reference.html
@@ -333,7 +333,7 @@ <h1>Reference</h1>
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/reference.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/snakemake_cluster.html b/snakemake_cluster.html
index 1fb33ba..69a8f65 100644
--- a/snakemake_cluster.html
+++ b/snakemake_cluster.html
@@ -421,7 +421,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_cluster.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/snakemake_multiple.html b/snakemake_multiple.html
index 9d17cb8..e7d8295 100644
--- a/snakemake_multiple.html
+++ b/snakemake_multiple.html
@@ -342,7 +342,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>The rules in the snakefile are nodes in the task graph. Two rules are
 connected by an arc in the task graph if the output of one rule is the
@@ -432,7 +432,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_multiple.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/snakemake_profiles.html b/snakemake_profiles.html
index 74ebdfc..ce74154 100644
--- a/snakemake_profiles.html
+++ b/snakemake_profiles.html
@@ -425,7 +425,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_profiles.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
   </script><script>
diff --git a/snakemake_single.html b/snakemake_single.html
index 0474876..bb76dfa 100644
--- a/snakemake_single.html
+++ b/snakemake_single.html
@@ -426,7 +426,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/hpc-workflows/snakemake_single.html",
   "dateCreated": "2023-04-19",
   "dateModified": "2023-08-02",
-  "datePublished": "2024-02-27"
+  "datePublished": "2024-03-05"
 }
 
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