update gcnv loading pedigree path

broadinstitute · Jan 16, 2025 · 1451457 · 1451457
1 parent 01899fa
commit 1451457
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/seqr/utils/search/add_data_utils.py b/seqr/utils/search/add_data_utils.py
@@ -178,4 +178,5 @@ def _upload_data_loading_files(projects: list[Project], user: User, file_path: s
 
 
 def _get_pedigree_path(pedigree_dir: str, genome_version: str, sample_type: str, dataset_type: str):
-    return f'{pedigree_dir}/{GENOME_VERSION_LOOKUP[genome_version]}/{dataset_type}/pedigrees/{sample_type}'
+    dag_dataset_type = _dag_dataset_type(sample_type, dataset_type)
+    return f'{pedigree_dir}/{GENOME_VERSION_LOOKUP[genome_version]}/{dag_dataset_type}/pedigrees/{sample_type}'
diff --git a/seqr/views/apis/data_manager_api_tests.py b/seqr/views/apis/data_manager_api_tests.py
@@ -1606,7 +1606,7 @@ def _trigger_error(self, url, body, dag_json, mock_open, mock_mkdir):
         response = self.client.post(url, content_type='application/json', data=json.dumps(body))
         self._assert_expected_load_data_requests(trigger_error=True, dataset_type='GCNV', sample_type='WES')
         self._assert_trigger_error(response, body, dag_json)
-        self._has_expected_ped_files(mock_open, mock_mkdir, 'SV', sample_type='WES')
+        self._has_expected_ped_files(mock_open, mock_mkdir, 'GCNV', sample_type='WES')
 
     def _has_expected_ped_files(self, mock_open, mock_mkdir, dataset_type, sample_type='WGS', single_project=False):
         mock_open.assert_has_calls([