-
Notifications
You must be signed in to change notification settings - Fork 179
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
updated from edge. Hope it does not break anything.
- Loading branch information
Showing
356 changed files
with
31,235 additions
and
4,094 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
File renamed without changes.
99 changes: 99 additions & 0 deletions
99
analyses-snapshot-testing/files/protocols/Flex_S_v2_21_tc_lids_happy_path.py
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,99 @@ | ||
| from typing import List, Dict, Any, Optional | ||
| from opentrons.protocol_api import ProtocolContext, Labware | ||
|
|
||
| metadata = {"protocolName": "Opentrons Flex Deck Riser with TC Lids Test"} | ||
| requirements = {"robotType": "Flex", "apiLevel": "2.21"} | ||
|
|
||
|
|
||
| """ | ||
| Setup: | ||
| - 1-5x lids are stacked in deck D2 | ||
| - Thermocycler installed | ||
| Run: | ||
| - For each lid in the stack (1-5x) | ||
| - Move lid in D2 to Thermocycler | ||
| - Remove top-most lid | ||
| - PAUSE, wait for tester to press continue | ||
| - Move lid from Thermocycler to new slot C2 | ||
| - Stacked onto any previously placed lids | ||
| """ | ||
|
|
||
| LID_STARTING_SLOT = "B2" | ||
| LID_ENDING_SLOT = "C2" | ||
| LID_COUNT = 3 | ||
| LID_DEFINITION = "opentrons_tough_pcr_auto_sealing_lid" | ||
| LID_BOTTOM_DEFINITION = "opentrons_tough_pcr_auto_sealing_lid" | ||
| DECK_RISER_NAME = "opentrons_flex_deck_riser" | ||
| USING_THERMOCYCLER = True | ||
|
|
||
| OFFSET_DECK = { | ||
| "pick-up": {"x": 0, "y": 0, "z": 0}, | ||
| "drop": {"x": 0, "y": 0, "z": 0}, | ||
| } | ||
| OFFSET_THERMOCYCLER = { | ||
| "pick-up": {"x": 0, "y": 0, "z": 0}, | ||
| "drop": {"x": 0, "y": 0, "z": 0}, | ||
| } | ||
|
|
||
|
|
||
| def _move_labware_with_offset_and_pause( | ||
| protocol: ProtocolContext, | ||
| labware: Labware, | ||
| destination: Any, | ||
| pick_up_offset: Optional[Dict[str, float]] = None, | ||
| drop_offset: Optional[Dict[str, float]] = None, | ||
| ) -> None: | ||
| protocol.move_labware( | ||
| labware, | ||
| destination, | ||
| use_gripper=True, | ||
| pick_up_offset=pick_up_offset, | ||
| drop_offset=drop_offset, | ||
| ) | ||
|
|
||
|
|
||
| def run(protocol: ProtocolContext): | ||
| # SETUP | ||
| deck_riser_adapter = protocol.load_adapter(DECK_RISER_NAME, "B2") | ||
|
|
||
| lids: List[Labware] = [deck_riser_adapter.load_labware(LID_BOTTOM_DEFINITION)] | ||
| for i in range(LID_COUNT - 1): | ||
| lids.append(lids[-1].load_labware(LID_DEFINITION)) | ||
| lids.reverse() # NOTE: reversing to more easily loop through lids from top-to-bottom | ||
| if USING_THERMOCYCLER: | ||
| # TODO: confirm if we need to load 96-well adapter onto Thermocycler | ||
| thermocycler = protocol.load_module("thermocyclerModuleV2") | ||
| thermocycler.open_lid() | ||
| plate_in_cycler = thermocycler.load_labware("armadillo_96_wellplate_200ul_pcr_full_skirt") | ||
| else: | ||
| plate_in_cycler = None | ||
|
|
||
| # RUN | ||
| prev_moved_lid: Optional[Labware] = None | ||
| for lid in lids: | ||
|
|
||
| if USING_THERMOCYCLER: | ||
| _move_labware_with_offset_and_pause( | ||
| protocol, | ||
| lid, | ||
| plate_in_cycler, | ||
| pick_up_offset=OFFSET_DECK["pick-up"], | ||
| drop_offset=OFFSET_THERMOCYCLER["drop"], | ||
| ) | ||
| _move_labware_with_offset_and_pause( | ||
| protocol, | ||
| lid, | ||
| prev_moved_lid if prev_moved_lid else LID_ENDING_SLOT, | ||
| pick_up_offset=OFFSET_THERMOCYCLER["pick-up"], | ||
| drop_offset=OFFSET_DECK["drop"], | ||
| ) | ||
| else: | ||
| _move_labware_with_offset_and_pause( | ||
| protocol, | ||
| lid, | ||
| prev_moved_lid if prev_moved_lid else LID_ENDING_SLOT, | ||
| pick_up_offset=OFFSET_DECK["pick-up"], | ||
| drop_offset=OFFSET_DECK["drop"], | ||
| ) | ||
| prev_moved_lid = lid |
22 changes: 22 additions & 0 deletions
22
analyses-snapshot-testing/files/protocols/Flex_X_v2_21_plate_reader_bad_slot.py
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| from typing import cast | ||
| from opentrons import protocol_api | ||
| from opentrons.protocol_api.module_contexts import AbsorbanceReaderContext | ||
|
|
||
| from opentrons import protocol_api | ||
| from opentrons.protocol_api import SINGLE, ALL | ||
|
|
||
| requirements = {"robotType": "Flex", "apiLevel": "2.21"} | ||
| metadata = {"protocolName": "plate_reader bad slot"} | ||
|
|
||
|
|
||
| def run(protocol: protocol_api.ProtocolContext): | ||
| partial_rack = protocol.load_labware(load_name="opentrons_flex_96_tiprack_1000ul", location="D3") | ||
| trash = protocol.load_trash_bin("A3") | ||
| instrument = protocol.load_instrument(instrument_name="flex_8channel_1000", mount="right") | ||
| instrument.configure_nozzle_layout(style=SINGLE, start="H1", tip_racks=[partial_rack]) | ||
|
|
||
| plate_1 = protocol.load_labware("nest_96_wellplate_200ul_flat", "D1") | ||
| mod = protocol.load_module("absorbanceReaderV1", "C1") | ||
| mod.open_lid() | ||
| protocol.move_labware(plate_1, mod, use_gripper=True) | ||
| mod.close_lid() |
Oops, something went wrong.