Update JGDAS_ENKF_SFC and JGDAS_ENKF_UPDATE jobs with COMIN/COMOUT instead of COM

jobs/JGDAS_ENKF_SFC

@@ -32,12 +32,13 @@ export APREFIX_ENS="${RUN}.t${cyc}z."
 export GPREFIX="${GDUMP}.t${gcyc}z."
 export GPREFIX_ENS="${GDUMP_ENS}.t${gcyc}z."
 
-RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_OBS \
-  COM_ATMOS_ANALYSIS_DET:COM_ATMOS_ANALYSIS_TMPL
+RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
+  COMIN_OBS:COM_OBS_TMPL \
+  COMIN_ATMOS_ANALYSIS_DET:COM_ATMOS_ANALYSIS_TMPL
 
 RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \
-  COM_OBS_PREV:COM_OBS_TMPL \
-  COM_ATMOS_ANALYSIS_DET_PREV:COM_ATMOS_ANALYSIS_TMPL
+  COMIN_OBS_PREV:COM_OBS_TMPL \
+  COMIN_ATMOS_ANALYSIS_DET_PREV:COM_ATMOS_ANALYSIS_TMPL
 
 ###############################################################
 # Run relevant script

jobs/JGDAS_ENKF_UPDATE

@@ -25,10 +25,10 @@ export APREFIX="${RUN}.t${cyc}z."
 export GPREFIX="${GDUMP_ENS}.t${gcyc}z."
 
 MEMDIR="ensstat" YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
-  COM_ATMOS_ANALYSIS_STAT:COM_ATMOS_ANALYSIS_TMPL
+  COMOUT_ATMOS_ANALYSIS_STAT:COM_ATMOS_ANALYSIS_TMPL
 
 MEMDIR="ensstat" RUN="enkfgdas" YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \
-  COM_ATMOS_HISTORY_STAT_PREV:COM_ATMOS_HISTORY_TMPL
+  COMIN_ATMOS_HISTORY_STAT_PREV:COM_ATMOS_HISTORY_TMPL
 
 
 ###############################################################
@@ -43,7 +43,7 @@ status=$?
 # Send Alerts
 ##############################################
 if [ ${SENDDBN} = YES  ] ; then
-   "${DBNROOT}/bin/dbn_alert" "MODEL" "ENKF1_MSC_enkfstat" "${job}" "${COM_ATMOS_ANALYSIS_STAT}/${APREFIX}enkfstat"
+   "${DBNROOT}/bin/dbn_alert" "MODEL" "ENKF1_MSC_enkfstat" "${job}" "${COMOUT_ATMOS_ANALYSIS_STAT}/${APREFIX}enkfstat"
 fi
 
 

scripts/exgdas_enkf_sfc.sh

@@ -85,11 +85,11 @@ LONB_CASE=$((res*4))
 
 # Global cycle requires these files
 export FNTSFA=${FNTSFA:-'                  '}
-export FNACNA=${FNACNA:-${COM_OBS}/${OPREFIX}seaice.5min.blend.grb}
-export FNSNOA=${FNSNOA:-${COM_OBS}/${OPREFIX}snogrb_t${JCAP_CASE}.${LONB_CASE}.${LATB_CASE}}
-[[ ! -f $FNSNOA ]] && export FNSNOA="${COM_OBS}/${OPREFIX}snogrb_t1534.3072.1536"
-FNSNOG=${FNSNOG:-${COM_OBS_PREV}/${GPREFIX}snogrb_t${JCAP_CASE}.${LONB_CASE}.${LATB_CASE}}
-[[ ! -f $FNSNOG ]] && FNSNOG="${COM_OBS_PREV}/${GPREFIX}snogrb_t1534.3072.1536"
+export FNACNA=${FNACNA:-${COMIN_OBS}/${OPREFIX}seaice.5min.blend.grb}
+export FNSNOA=${FNSNOA:-${COMIN_OBS}/${OPREFIX}snogrb_t${JCAP_CASE}.${LONB_CASE}.${LATB_CASE}}
+[[ ! -f $FNSNOA ]] && export FNSNOA="${COMIN_OBS}/${OPREFIX}snogrb_t1534.3072.1536"
+FNSNOG=${FNSNOG:-${COMIN_OBS_PREV}/${GPREFIX}snogrb_t${JCAP_CASE}.${LONB_CASE}.${LATB_CASE}}
+[[ ! -f $FNSNOG ]] && FNSNOG="${COMIN_OBS_PREV}/${GPREFIX}snogrb_t1534.3072.1536"
 
 # Set CYCLVARS by checking grib date of current snogrb vs that of prev cycle
 if [ ${RUN_GETGES:-"NO"} = "YES" ]; then
@@ -110,7 +110,7 @@ else
 fi
 
 if [ $DONST = "YES" ]; then
-    export NST_FILE=${NST_FILE:-${COM_ATMOS_ANALYSIS_DET}/${APREFIX}dtfanl.nc}
+    export NST_FILE=${NST_FILE:-${COMIN_ATMOS_ANALYSIS_DET}/${APREFIX}dtfanl.nc}
 else
     export NST_FILE="NULL"
 fi
@@ -138,13 +138,13 @@ if [ $DOIAU = "YES" ]; then
             memchar="mem$cmem"
 
             MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl \
-                COM_ATMOS_RESTART_MEM:COM_ATMOS_RESTART_TMPL
+                COMOUT_ATMOS_RESTART_MEM:COM_ATMOS_RESTART_TMPL
 
             MEMDIR=${gmemchar} RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl \
                 COMIN_ATMOS_RESTART_MEM_PREV:COM_ATMOS_RESTART_TMPL
 
             MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl \
-                COM_ATMOS_ANALYSIS_MEM:COM_ATMOS_ANALYSIS_TMPL
+                COMIN_ATMOS_ANALYSIS_MEM:COM_ATMOS_ANALYSIS_TMPL
 
             MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl \
                 COMIN_SNOW_ANALYSIS_MEM:COM_SNOW_ANALYSIS_TMPL
@@ -156,7 +156,7 @@ if [ $DOIAU = "YES" ]; then
                 sfcdata_dir="${COMIN_ATMOS_RESTART_MEM_PREV}"
             fi
 
-            [[ ${TILE_NUM} -eq 1 ]] && mkdir -p "${COM_ATMOS_RESTART_MEM}"
+            [[ ${TILE_NUM} -eq 1 ]] && mkdir -p "${COMOUT_ATMOS_RESTART_MEM}"
             ${NCP} "${sfcdata_dir}/${bPDY}.${bcyc}0000.sfc_data.tile${n}.nc" \
                 "${DATA}/fnbgsi.${cmem}"
             ${NCP} "${DATA}/fnbgsi.${cmem}" "${DATA}/fnbgso.${cmem}"
@@ -165,7 +165,7 @@ if [ $DOIAU = "YES" ]; then
 
             if [[ ${GSI_SOILANAL} = "YES" ]]; then
                 FHR=6
-                ${NCP} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX_ENS}sfci00${FHR}.nc" \
+                ${NCP} "${COMIN_ATMOS_ANALYSIS_MEM}/${APREFIX_ENS}sfci00${FHR}.nc" \
                    "${DATA}/lnd_incr.${cmem}"
             fi
         done # ensembles
@@ -184,18 +184,18 @@ if [ $DOIAU = "YES" ]; then
             memchar="mem$cmem"
 
             MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl \
-                COM_ATMOS_RESTART_MEM:COM_ATMOS_RESTART_TMPL
+                COMOUT_ATMOS_RESTART_MEM:COM_ATMOS_RESTART_TMPL
 
             MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl \
-                COM_ATMOS_ANALYSIS_MEM:COM_ATMOS_ANALYSIS_TMPL
+                COMIN_ATMOS_ANALYSIS_MEM:COM_ATMOS_ANALYSIS_TMPL
 
-            [[ ${TILE_NUM} -eq 1 ]] && mkdir -p "${COM_ATMOS_RESTART_MEM}"
-            cpfs "${DATA}/fnbgso.${cmem}" "${COM_ATMOS_RESTART_MEM}/${bPDY}.${bcyc}0000.sfcanl_data.tile${n}.nc"
+            [[ ${TILE_NUM} -eq 1 ]] && mkdir -p "${COMOUT_ATMOS_RESTART_MEM}"
+            cpfs "${DATA}/fnbgso.${cmem}" "${COMOUT_ATMOS_RESTART_MEM}/${bPDY}.${bcyc}0000.sfcanl_data.tile${n}.nc"
 
 
             if [[ ${GSI_SOILANAL} = "YES" ]]; then
                 FHR=6
-                ${NCP} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX_ENS}sfci00${FHR}.nc" \
+                ${NCP} "${COMIN_ATMOS_ANALYSIS_MEM}/${APREFIX_ENS}sfci00${FHR}.nc" \
                    "${DATA}/lnd_incr.${cmem}"
             fi
         done # ensembles
@@ -254,11 +254,11 @@ if [ $DOSFCANL_ENKF = "YES" ]; then
             memchar="mem${cmem}"
 
             MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl \
-                COM_ATMOS_RESTART_MEM:COM_ATMOS_RESTART_TMPL
+                COMOUT_ATMOS_RESTART_MEM:COM_ATMOS_RESTART_TMPL
 
-            [[ ! -d "${COM_ATMOS_RESTART_MEM}" ]] && mkdir -p "${COM_ATMOS_RESTART_MEM}"
+            [[ ! -d "${COMOUT_ATMOS_RESTART_MEM}" ]] && mkdir -p "${COMOUT_ATMOS_RESTART_MEM}"
 
-            cpfs "${DATA}/fnbgso.${cmem}" "${COM_ATMOS_RESTART_MEM}/${PDY}.${cyc}0000.sfcanl_data.tile${n}.nc"
+            cpfs "${DATA}/fnbgso.${cmem}" "${COMOUT_ATMOS_RESTART_MEM}/${PDY}.${cyc}0000.sfcanl_data.tile${n}.nc"
 
         done
 

scripts/exgdas_enkf_update.sh

@@ -95,7 +95,7 @@ GSI_SOILANAL=${GSI_SOILANAL:-"NO"}
 
 ################################################################################
 
-ATMGES_ENSMEAN="${COM_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}atmf006.ensmean.nc"
+ATMGES_ENSMEAN="${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}atmf006.ensmean.nc"
 LONB_ENKF=${LONB_ENKF:-$($NCLEN $ATMGES_ENSMEAN grid_xt)} # get LONB_ENKF
 LATB_ENKF=${LATB_ENKF:-$($NCLEN $ATMGES_ENSMEAN grid_yt)} # get LATB_ENFK
 LEVS_ENKF=${LEVS_ENKF:-$($NCLEN $ATMGES_ENSMEAN pfull)} # get LEVS_ENFK
@@ -142,7 +142,7 @@ $NLN $ANAVINFO   anavinfo
 $NLN $VLOCALEIG  vlocal_eig.dat
 
 # Bias correction coefficients based on the ensemble mean
-${NLN} "${COM_ATMOS_ANALYSIS_STAT}/${GBIASe}" "satbias_in"
+${NLN} "${COMOUT_ATMOS_ANALYSIS_STAT}/${GBIASe}" "satbias_in"
 
 ################################################################################
 
@@ -152,13 +152,13 @@ if [ $USE_CFP = "YES" ]; then
    cat > $DATA/untar.sh << EOFuntar
 #!/bin/sh
 memchar=\$1
-COM_ATMOS_ANALYSIS=\$2
+COMOUT_ATMOS_ANALYSIS=\$2
 flist="$CNVSTAT $OZNSTAT $RADSTAT"
 for ftype in \$flist; do
    if [ \$memchar = "ensmean" ]; then
-      fname=\${COM_ATMOS_ANALYSIS}/\${ftype}.ensmean
+      fname=\${COMOUT_ATMOS_ANALYSIS}/\${ftype}.ensmean
    else
-      fname=\${COM_ATMOS_ANALYSIS}/\${ftype}
+      fname=\${COMOUT_ATMOS_ANALYSIS}/\${ftype}
    fi
    tar -xvf \$fname
 done
@@ -171,13 +171,13 @@ fi
 
 flist="$CNVSTAT $OZNSTAT $RADSTAT"
 if [ $USE_CFP = "YES" ]; then
-   echo "${nm} ${DATA}/untar.sh ensmean ${COM_ATMOS_ANALYSIS_STAT}" | tee -a "${DATA}/mp_untar.sh"
+   echo "${nm} ${DATA}/untar.sh ensmean ${COMOUT_ATMOS_ANALYSIS_STAT}" | tee -a "${DATA}/mp_untar.sh"
    if [ ${CFP_MP:-"NO"} = "YES" ]; then
        nm=$((nm+1))
    fi
 else
    for ftype in $flist; do
-      fname="${COM_ATMOS_ANALYSIS_STAT}/${ftype}.ensmean"
+      fname="${COMOUT_ATMOS_ANALYSIS_STAT}/${ftype}.ensmean"
       tar -xvf $fname
    done
 fi
@@ -191,55 +191,55 @@ for imem in $(seq 1 $NMEM_ENS); do
    memchar="mem"$(printf %03i $imem)
 
    MEMDIR=${gmemchar} RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -x \
-      COM_ATMOS_HISTORY_MEM_PREV:COM_ATMOS_HISTORY_TMPL
+      COMIN_ATMOS_HISTORY_MEM_PREV:COM_ATMOS_HISTORY_TMPL
 
    MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl -x \
-      COM_ATMOS_ANALYSIS_MEM:COM_ATMOS_ANALYSIS_TMPL
+      COMOUT_ATMOS_ANALYSIS_MEM:COM_ATMOS_ANALYSIS_TMPL
 
    if [ $lobsdiag_forenkf = ".false." ]; then
       if [ $USE_CFP = "YES" ]; then
-         echo "${nm} ${DATA}/untar.sh ${memchar} ${COM_ATMOS_ANALYSIS_MEM}" | tee -a "${DATA}/mp_untar.sh"
+         echo "${nm} ${DATA}/untar.sh ${memchar} ${COMOUT_ATMOS_ANALYSIS_MEM}" | tee -a "${DATA}/mp_untar.sh"
          if [ ${CFP_MP:-"NO"} = "YES" ]; then
              nm=$((nm+1))
          fi
       else
          for ftype in $flist; do
-            fname="${COM_ATMOS_ANALYSIS_MEM}/${ftype}"
+            fname="${COMOUT_ATMOS_ANALYSIS_MEM}/${ftype}"
             tar -xvf $fname
          done
       fi
    fi
-   mkdir -p "${COM_ATMOS_ANALYSIS_MEM}"
+   mkdir -p "${COMOUT_ATMOS_ANALYSIS_MEM}"
    for FHR in $nfhrs; do
-      ${NLN} "${COM_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}atmf00${FHR}${ENKF_SUFFIX}.nc" \
+      ${NLN} "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}atmf00${FHR}${ENKF_SUFFIX}.nc" \
          "sfg_${PDY}${cyc}_fhr0${FHR}_${memchar}"
       if [ $GSI_SOILANAL = "YES" ]; then
-         ${NLN} "${COM_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfcf00${FHR}${ENKF_SUFFIX}.nc" \
+         ${NLN} "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfcf00${FHR}${ENKF_SUFFIX}.nc" \
              "bfg_${PDY}${cyc}_fhr0${FHR}_${memchar}"
       fi
       if [ $cnvw_option = ".true." ]; then
-         ${NLN} "${COM_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfcf00${FHR}.nc" \
+         ${NLN} "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfcf00${FHR}.nc" \
             "sfgsfc_${PDY}${cyc}_fhr0${FHR}_${memchar}"
       fi
       if [ $FHR -eq 6 ]; then
          if [ $DO_CALC_INCREMENT = "YES" ]; then
-            ${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atmanl.nc" \
+            ${NLN} "${COMOUT_ATMOS_ANALYSIS_MEM}/${APREFIX}atmanl.nc" \
                "sanl_${PDY}${cyc}_fhr0${FHR}_${memchar}"
          else
-            ${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atminc.nc" \
+            ${NLN} "${COMOUT_ATMOS_ANALYSIS_MEM}/${APREFIX}atminc.nc" \
                "incr_${PDY}${cyc}_fhr0${FHR}_${memchar}"
          fi
       else
          if [ $DO_CALC_INCREMENT = "YES" ]; then
-            ${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atma00${FHR}.nc" \
+            ${NLN} "${COMOUT_ATMOS_ANALYSIS_MEM}/${APREFIX}atma00${FHR}.nc" \
                "sanl_${PDY}${cyc}_fhr0${FHR}_${memchar}"
          else
-            ${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}atmi00${FHR}.nc" \
+            ${NLN} "${COMOUT_ATMOS_ANALYSIS_MEM}/${APREFIX}atmi00${FHR}.nc" \
                "incr_${PDY}${cyc}_fhr0${FHR}_${memchar}"
          fi
       fi
       if [ $GSI_SOILANAL = "YES" ]; then
-          ${NLN} "${COM_ATMOS_ANALYSIS_MEM}/${APREFIX}sfci00${FHR}.nc" \
+          ${NLN} "${COMOUT_ATMOS_ANALYSIS_MEM}/${APREFIX}sfci00${FHR}.nc" \
            "sfcincr_${PDY}${cyc}_fhr0${FHR}_${memchar}"
       fi
    done
@@ -248,10 +248,10 @@ done
 # Ensemble mean guess
 for FHR in $nfhrs; do
 
-   ${NLN} "${COM_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}atmf00${FHR}.ensmean.nc" \
+   ${NLN} "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}atmf00${FHR}.ensmean.nc" \
       "sfg_${PDY}${cyc}_fhr0${FHR}_ensmean"
    if [ $cnvw_option = ".true." ]; then
-      ${NLN} "${COM_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}sfcf00${FHR}.ensmean.nc" \
+      ${NLN} "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}sfcf00${FHR}.ensmean.nc" \
          "sfgsfc_${PDY}${cyc}_fhr0${FHR}_ensmean"
    fi
 done
@@ -412,7 +412,7 @@ $APRUN_ENKF ${DATA}/$(basename $ENKFEXEC) 1>stdout 2>stderr
 export err=$?; err_chk
 
 # Cat runtime output files.
-cat stdout stderr > "${COM_ATMOS_ANALYSIS_STAT}/${ENKFSTAT}"
+cat stdout stderr > "${COMOUT_ATMOS_ANALYSIS_STAT}/${ENKFSTAT}"
 
 ################################################################################
 #  Postprocessing