Skip to content

Commit

Permalink
Built site for gh-pages
Browse files Browse the repository at this point in the history
  • Loading branch information
Quarto GHA Workflow Runner committed Aug 14, 2024
1 parent d3fdc17 commit dd869a5
Show file tree
Hide file tree
Showing 4 changed files with 35 additions and 35 deletions.
2 changes: 1 addition & 1 deletion .nojekyll
Original file line number Diff line number Diff line change
@@ -1 +1 @@
473aa371
85658676
2 changes: 1 addition & 1 deletion index.html
Original file line number Diff line number Diff line change
Expand Up @@ -164,9 +164,9 @@ <h1 class="title">Pachitariu + Stringer lab</h1>
<section id="research" class="level2">
<h2 class="anchored" data-anchor-id="research">Research</h2>
<p>Our lab combines machine learning / AI techniques and large-scale imaging to investigate plasticity rules and sensory representations in cortical circuits. Example recording of 50,000+ neurons simultaneously at 3Hz, using two-photon calcium imaging:</p>
<!--<img src="https://www.suite2p.org/static/images/Movie1.mp4" width="100%"></img>-->
<video width="100%" autoplay="" alt="50,000 neurons recorded with two-photon calcium imaging from mouse visual cortex">
<source src="https://www.suite2p.org/static/images/Movie1.mp4" type="video/mp4">
<p><br></p>
<p>Learn more about our research <a href="./research/index.html">here</a> and see all publications <a href="./research/publications.html">here</a>. We are committed to open science - we share all the data and code generated by our studies, linked <a href="./code_and_data.html">here</a>. We also have developed several data processing packages for the bio/neuro community: <a href="./research/posts/cellpose.html">cellpose</a>, <a href="./research/posts/kilosort.html">kilosort</a>, <a href="./research/posts/suite2p.html">suite2p</a>, <a href="./research/posts/rastermap.html">facemap</a>, and <a href="./research/posts/rastermap.html">rastermap</a></p>
</video></section>
<section id="news" class="level2">
Expand Down
26 changes: 13 additions & 13 deletions research/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -222,7 +222,7 @@ <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-list

<div class="quarto-listing quarto-listing-container-default" id="listing-listing">
<div class="list quarto-listing-default">
<div class="quarto-post image-right" data-index="0" data-categories="Vision,Thousands of neurons,Machine learning" data-listing-date-sort="1719792000000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="560">
<div class="quarto-post image-right" data-index="0" data-categories="Vision,Thousands of neurons,Machine learning" data-listing-date-sort="1719792000000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="560">
<div class="thumbnail">
<p><a href="../research/posts/minimodels.html" class="no-external"></a></p><a href="../research/posts/minimodels.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/du_cover.jpg" class="thumbnail-image" alt="minimodels for single neurons in V1"></p>
Expand Down Expand Up @@ -258,7 +258,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="1" data-categories="Machine learning,Tools" data-listing-date-sort="1709251200000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="183">
<div class="quarto-post image-right" data-index="1" data-categories="Machine learning,Tools" data-listing-date-sort="1709251200000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="183">
<div class="thumbnail">
<p><a href="../research/posts/kilosort.html" class="no-external"></a></p><a href="../research/posts/kilosort.html" class="no-external">
<p><img loading="lazy" src="http://www.kilosort.org/static/downloads/kilosort_logo_small.png" class="thumbnail-image" alt="spikes colored by amplitude along probe"></p>
Expand Down Expand Up @@ -291,7 +291,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="2" data-categories="Vision,Thousands of neurons,Behavior" data-listing-date-sort="1706745600000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="527">
<div class="quarto-post image-right" data-index="2" data-categories="Vision,Thousands of neurons,Behavior" data-listing-date-sort="1706745600000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="527">
<div class="thumbnail">
<p><a href="../research/posts/unsupervised.html" class="no-external"></a></p><a href="../research/posts/unsupervised.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/zhong_cover.png" class="thumbnail-image" alt="unsupervised and supervised learning"></p>
Expand Down Expand Up @@ -327,7 +327,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="3" data-categories="Behavior,Thousands of neurons,Machine learning,Tools" data-listing-date-sort="1698796800000" data-listing-file-modified-sort="1723650249040" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="255">
<div class="quarto-post image-right" data-index="3" data-categories="Behavior,Thousands of neurons,Machine learning,Tools" data-listing-date-sort="1698796800000" data-listing-file-modified-sort="1723650492236" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="255">
<div class="thumbnail">
<p><a href="../research/posts/facemap.html" class="no-external"></a></p><a href="../research/posts/facemap.html" class="no-external">
<p><img loading="lazy" src="https://raw.githubusercontent.com/MouseLand/facemap/main/facemap/mouse.png" class="thumbnail-image" alt="facemap"></p>
Expand Down Expand Up @@ -366,7 +366,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="4" data-categories="Thousands of neurons,Machine learning,Tools" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="353">
<div class="quarto-post image-right" data-index="4" data-categories="Thousands of neurons,Machine learning,Tools" data-listing-date-sort="1690848000000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="353">
<div class="thumbnail">
<p><a href="../research/posts/rastermap.html" class="no-external"></a></p><a href="../research/posts/rastermap.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/rm_fig3.jpg" class="thumbnail-image" alt="rastermap visualization of neural activity during a virtual reality task"></p>
Expand Down Expand Up @@ -402,7 +402,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="5" data-categories="Segmentation,Machine learning,Tools" data-listing-date-sort="1667779200000" data-listing-file-modified-sort="1723650249040" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="597">
<div class="quarto-post image-right" data-index="5" data-categories="Segmentation,Machine learning,Tools" data-listing-date-sort="1667779200000" data-listing-file-modified-sort="1723650492236" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="597">
<div class="thumbnail">
<p><a href="../research/posts/cellpose2.html" class="no-external"></a></p><a href="../research/posts/cellpose2.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/cellpose2_cover.png" class="thumbnail-image" alt="retrained network vs original cellpose network on fluorescence and live cell image."></p>
Expand Down Expand Up @@ -438,7 +438,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="6" data-categories="Thousands of neurons,Behavior" data-listing-date-sort="1651708800000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="149">
<div class="quarto-post image-right" data-index="6" data-categories="Thousands of neurons,Behavior" data-listing-date-sort="1651708800000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="149">
<div class="thumbnail">
<p><a href="../research/posts/notso.html" class="no-external"></a></p><a href="../research/posts/notso.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/ns_cover.jpg" class="thumbnail-image" alt="dimensionality of spontaneous activity increases across development, becomes more related to neural activity, and orthogonal to stimulus-driven activity."></p>
Expand Down Expand Up @@ -471,7 +471,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="7" data-categories="Vision,Thousands of neurons" data-listing-date-sort="1635724800000" data-listing-file-modified-sort="1723650249040" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="598">
<div class="quarto-post image-right" data-index="7" data-categories="Vision,Thousands of neurons" data-listing-date-sort="1635724800000" data-listing-file-modified-sort="1723650492236" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="598">
<div class="thumbnail">
<p><a href="../research/posts/highprecision.html" class="no-external"></a></p><a href="../research/posts/highprecision.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/hp_cover2.jpg" class="thumbnail-image" alt="highly precise encoding of visual stimuli"></p>
Expand Down Expand Up @@ -504,7 +504,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="8" data-categories="Segmentation,Machine learning,Tools" data-listing-date-sort="1609459200000" data-listing-file-modified-sort="1723650249040" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="393">
<div class="quarto-post image-right" data-index="8" data-categories="Segmentation,Machine learning,Tools" data-listing-date-sort="1609459200000" data-listing-file-modified-sort="1723650492236" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="393">
<div class="thumbnail">
<p><a href="../research/posts/cellpose.html" class="no-external"></a></p><a href="../research/posts/cellpose.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/cellpose_cover.png" class="thumbnail-image"></p>
Expand Down Expand Up @@ -540,7 +540,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="9" data-categories="Vision,Thousands of neurons" data-listing-date-sort="1559347200000" data-listing-file-modified-sort="1723650249040" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="829">
<div class="quarto-post image-right" data-index="9" data-categories="Vision,Thousands of neurons" data-listing-date-sort="1559347200000" data-listing-file-modified-sort="1723650492236" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="829">
<div class="thumbnail">
<p><a href="../research/posts/highdim.html" class="no-external"></a></p><a href="../research/posts/highdim.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/hd_cover.png" class="thumbnail-image" alt="neural activity reconstructed from subsets of principal components, and sorted by rastermap"></p>
Expand Down Expand Up @@ -573,7 +573,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="10" data-categories="Thousands of neurons,Behavior,Machine learning" data-listing-date-sort="1557014400000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="700">
<div class="quarto-post image-right" data-index="10" data-categories="Thousands of neurons,Behavior,Machine learning" data-listing-date-sort="1557014400000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="700">
<div class="thumbnail">
<p><a href="../research/posts/spontaneous.html" class="no-external"></a></p><a href="../research/posts/spontaneous.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/spont_cover.jpeg" class="thumbnail-image" alt="neural activity predicted from the principal components of mouse face motion"></p>
Expand Down Expand Up @@ -609,7 +609,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="11" data-categories="Thousands of neurons,Segmentation,Machine learning,Tools" data-listing-date-sort="1472688000000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="141">
<div class="quarto-post image-right" data-index="11" data-categories="Thousands of neurons,Segmentation,Machine learning,Tools" data-listing-date-sort="1472688000000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="141">
<div class="thumbnail">
<p><a href="../research/posts/suite2p.html" class="no-external"></a></p><a href="../research/posts/suite2p.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/suite2p_cover.jpg" class="thumbnail-image" alt="neuron traces and masks"></p>
Expand Down Expand Up @@ -648,7 +648,7 @@ <h3 class="no-anchor listing-title">
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="12" data-categories="Neural modeling,Behavior" data-listing-date-sort="1462060800000" data-listing-file-modified-sort="1723650249184" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="463">
<div class="quarto-post image-right" data-index="12" data-categories="Neural modeling,Behavior" data-listing-date-sort="1462060800000" data-listing-file-modified-sort="1723650492380" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="463">
<div class="thumbnail">
<p><a href="../research/posts/inhibitory.html" class="no-external"></a></p><a href="../research/posts/inhibitory.html" class="no-external">
<p><img loading="lazy" src="../research/posts/images/inh_cover.jpg" class="thumbnail-image" alt="neuronal network simulations fit to neural population activity"></p>
Expand Down
40 changes: 20 additions & 20 deletions sitemap.xml
Original file line number Diff line number Diff line change
Expand Up @@ -2,82 +2,82 @@
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
<url>
<loc>https://MouseLand.github.io/index.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.232Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/people/carsen.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.232Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/positions.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/rastermap.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/cellpose.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/spontaneous.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/unsupervised.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/minimodels.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/suite2p.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/inhibitory.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/index.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/highdim.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/kilosort.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/cellpose2.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/facemap.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/highprecision.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/posts/notso.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/research/publications.html</loc>
<lastmod>2024-08-14T15:44:09.184Z</lastmod>
<lastmod>2024-08-14T15:48:12.380Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/code_and_data.html</loc>
<lastmod>2024-08-14T15:44:09.016Z</lastmod>
<lastmod>2024-08-14T15:48:12.216Z</lastmod>
</url>
<url>
<loc>https://MouseLand.github.io/people/index.html</loc>
<lastmod>2024-08-14T15:44:09.040Z</lastmod>
<lastmod>2024-08-14T15:48:12.236Z</lastmod>
</url>
</urlset>

0 comments on commit dd869a5

Please sign in to comment.