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[CI] MDAnalysis self-dependency build fix #4502

Merged
merged 17 commits into from
Sep 7, 2024
Merged

[CI] MDAnalysis self-dependency build fix #4502

merged 17 commits into from
Sep 7, 2024

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IAlibay
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@IAlibay IAlibay commented Mar 10, 2024

Fixes #4492

Work in progress:

  • Currently checking if we can just pick up the build via the src build directly

TODO:

  • Check package building
  • Check cron builds

Changes made in this Pull Request:

  • MDAKits are no longer in the direct pre-build install lists, they get picked up during the src build.

PR Checklist

  • Tests?
  • Docs?
  • CHANGELOG updated?
  • Issue raised/referenced?

Developers certificate of origin


📚 Documentation preview 📚: https://mdanalysis--4502.org.readthedocs.build/en/4502/

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github-actions bot commented Mar 10, 2024

Linter Bot Results:

Hi @IAlibay! Thanks for making this PR. We linted your code and found the following:

There are currently no issues detected! 🎉

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codecov bot commented Mar 10, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 93.84%. Comparing base (277b99f) to head (7566d56).
Report is 42 commits behind head on develop.

Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #4502      +/-   ##
===========================================
+ Coverage    93.62%   93.84%   +0.21%     
===========================================
  Files          173      185      +12     
  Lines        21422    22488    +1066     
  Branches      3979     3979              
===========================================
+ Hits         20056    21103    +1047     
- Misses         903      931      +28     
+ Partials       463      454       -9     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@IAlibay IAlibay marked this pull request as ready for review September 7, 2024 13:43
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IAlibay commented Sep 7, 2024

Cron failures are good - they are pointing out to an existing issue that needs fixing in our conda-forge package.

@IAlibay IAlibay requested a review from yuxuanzhuang September 7, 2024 14:34
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IAlibay commented Sep 7, 2024

conda-forge tests are now just related to rdkit - this is a known failure (and fixed in develop), nothing else to do here.

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lgtm!

@IAlibay IAlibay merged commit d11a1ef into develop Sep 7, 2024
51 of 68 checks passed
@@ -4,6 +4,11 @@ on:
# 3 am Tuesdays and Fridays
- cron: "0 3 * * 2,5"
workflow_dispatch:
# Uncomment when you need to test on a PR
pull_request:
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comment out :)

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Ah completely forgot to do this!

@IAlibay IAlibay mentioned this pull request Sep 8, 2024
5 tasks
RMeli pushed a commit to RMeli/mdanalysis that referenced this pull request Oct 3, 2024
* Fix MDAnalysis cron CI
* Fix deployment workflow python and utility versions
* Make sure we install mdakit dependencies using no-deps
* Fix nightly wheel tests.
@IAlibay IAlibay deleted the fix-ci-deps branch October 26, 2024 18:38
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[CI] Dependency resolution issues MDAnalysis installs
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