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Little changes on the pamm compilation #27

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Little changes on the pamm compilation #27

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1b01e06
moved precompiled pamm in a dedicated directory
Iximiel Dec 10, 2021
282a021
added precompiled pamm for ubuntu machines
Iximiel Dec 10, 2021
db60b5a
now pamm Makefile creates the bin directory
Iximiel Dec 10, 2021
2259562
updated readme
Iximiel Dec 10, 2021
5095ca2
hidden warnings in the Makefile
Iximiel Dec 10, 2021
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17 changes: 17 additions & 0 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -37,6 +37,23 @@ or for development purposes via
python setup.py develop
```

#### In case of errors

If `python setup.py compile` fails (for example if blas and lapack are not installed on your system) you can copy the precompiled static executable `pamm_ubuntu` or `pamm_mac` into the pamm bin directory.

```
mkdir -p ./gmplabtools/pamm/precompiledPamm/bin
cp ./gmplabtools/pamm/precompiledPamm/pamm_ubuntu ./gmplabtools/pamm/precompiledPamm/bin/pamm
```
or
```
mkdir -p ./gmplabtools/pamm/precompiledPamm/bin
cp ./gmplabtools/pamm/precompiledPamm/pamm_mac ./gmplabtools/pamm/precompiledPamm/bin/pamm
```


And then install gmplabtools with `python setup.py install`.

### Docker

In order to build docker images following command should be used
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Empty file removed gmplabtools/pamm/bin/.gitkeep
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0 gmplabtools/pamm/bin/pamm → gmplabtools/pamm/precompiledPamm/pamm_mac
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Binary file added gmplabtools/pamm/precompiledPamm/pamm_ubuntu
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18 changes: 13 additions & 5 deletions gmplabtools/pamm/src/Makefile
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Expand Up @@ -20,23 +20,31 @@
# SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

FF=gfortran
FFLAGS=-O3 -g -Wall -Wno-maybe-uninitialized -cpp
DEVELOPFLAGS= -g -Wall -Wno-maybe-uninitialized
FFLAGS=-O3 -cpp #$(DEVELOPFLAGS)
LDFLAGS=-llapack -lblas
MODULES=libpamm.f90 xyz.f90 random.f90
OBJECTS=$(MODULES:.f90=.o)
TOOLS=pamm

.PHONY: all clean $(TOOLS)
.PHONY: all clean cleanall $(TOOLS)
all: $(TOOLS)

$(TOOLS:%=%.o): $(OBJECTS)

$(TOOLS): % : ../bin/%

$(TOOLS:%=../bin/%): ../bin/%: %.o $(OBJECTS)
$(FF) $(FFLAGS) -o $@ $^ $(LDFLAGS)
@echo compiling executable $@
@mkdir -p ../bin
@$(FF) $(FFLAGS) -o $@ $^ $(LDFLAGS)

%.o: %.f90
$(FF) $(FFLAGS) -c $<
@echo compiling object $@
@$(FF) $(FFLAGS) -c $<

clean:
rm *.o *.mod
@rm -vf *.o *.mod

cleanall: clean
@rm -vf ../bin/pamm
2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -84,7 +84,7 @@ def finalize_options(self):

def run(self):
# clean folder
_ = subprocess.run("cd ./gmplabtools/pamm/src && make clean", shell=True)
_ = subprocess.run("cd ./gmplabtools/pamm/src && make cleanall", shell=True)

cmd_to_run = "cd ./gmplabtools/pamm/src && make"
completed_process = subprocess.run(cmd_to_run, universal_newlines=True, shell=True)
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