Skip to content

failed to create bed track #2027

Answered by cmdcolin
1024488648 asked this question in Q&A
Discussion options

You must be logged in to vote

hi there, this is a little bit due to us being too strict about what a "BED file" is. we could maybe just accept that it is an arbitrary number of fields

you can fix this however if you add a simple "header" line to your bed file naming the fields

so change your file to have a header line like

#chr    start   end     name    score   otherfield count     score1     score2      score3
1       33200   33515   ATAC_1_1        316     33300   48      6.47536 2.15794 4.65096
1       37952   38268   ATAC_1_2        317     38075   59      10.96255        2.64237 8.7829
1       55419   55599   ATAC_1_3        181     55423   43      4.76286 1.93774 3.11319
1       56988   57272   ATAC_1_4        …

Replies: 1 comment

Comment options

You must be logged in to vote
0 replies
Answer selected by 1024488648
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Category
Q&A
Labels
None yet
2 participants