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initial checkin #1

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@bwalsh bwalsh commented Dec 18, 2024 •
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This PR:

  • adds a command line utility fq that reads a GraphDefinition and traverses the server, storing the resources in a local sqlite db

For example:

fq --fhir-base-url https://hapi.fhir-aggregator.org/fhir/ --graph-definition-file-path META/GraphDefinition.json --start-resource-id 5eb52055-9c6e-556f-b920-ab1d7f144340 --start-resource-type ResearchStudy --debug

Will produce

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initial checkin
33db5f1 
fix typo

black formatting

black formatting
@bwalsh bwalsh requested a review from teslajoy December 18, 2024 01:50
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bwalsh commented Dec 18, 2024 •
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GraphDefinition updated. ImagingStudy, Condition and Medication are retrieved

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bwalsh commented Dec 19, 2024

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@bwalsh bwalsh requested a review from parkergray221 December 19, 2024 02:07
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bwalsh commented Jan 3, 2025 •
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merged #3

Remaining tasks:

  • modify GraphDefinition to retrieve ResearchStudy and ResearchSubject
  • add additional dataframes (Patient, File, ...)
  • create pypi release
  • other ?

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@teslajoy teslajoy Awaiting requested review from teslajoy

@parkergray221 parkergray221 Awaiting requested review from parkergray221

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