Upgrade dependencies 2025-01-06-v2 (DataBiosphere/azul#6805)

.github/workflows/docker-publish.yml

@@ -21,7 +21,7 @@ env:
   # value isn't reflected in the tag for this image, you also need to bump the
   # internal version below when changing this variable.
   #
-  azul_docker_pycharm_base_image_tag: bookworm-20241223
+  azul_docker_pycharm_base_image_tag: bookworm-20250113
 
   # The version of PyCharm to install in this image.
   #
@@ -31,7 +31,7 @@ env:
   # upstream image followed by the value of this variable. Increment this value
   # to update the OS packages installed in the image.
   #
-  azul_docker_pycharm_internal_version: 41
+  azul_docker_pycharm_internal_version: 42
 
 jobs:
   build: