add scanned sheets 1ha #272

	on:
	push:
	branches:
	- master

	name: QA_QC_checks

	jobs:
	QA_QC_checks:
	# Set the operating system CI assumes
	runs-on: ubuntu-latest

	# All steps in workflow
	steps:
	# Housekeeping: various GA tools, install R, install pandoc
	# (to be able to use RMarkdown)
	- uses: actions/checkout@v3

	# Shouldn't need this I think?
	# - name: Install cURL Headers
	# run: sudo apt-get install libcurl4-openssl-dev

	- uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true #use R Studio Package Manager to speed up install
	- uses: r-lib/actions/setup-pandoc@v2
	- name: Install ImageMagick #using advice from https://github.com/rstudio/r-system-requirements/blob/main/rules/imagemagick.json
	run: \|
	sudo apt-get install imagemagick
	sudo apt-get install libmagick++-dev
	sudo apt-get install gsfonts
	- uses: r-lib/actions/setup-renv@v2
	with:
	cache-version: 3

	# Create data outputs from data_raw
	- name: Run data cleaning scripts
	id: create_master_csv
	run: \|
	source("01_clean_survey_data.R")
	shell: Rscript {0}

	# knit data validation report
	- name: Generate report
	id: generate_error_reports
	run: Rscript -e 'rmarkdown::render("docs/survey_validation/survey_validation.Rmd")'
	- name: Commit results
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "GitHub Actions"
	git commit -a -m 'Ran cleaning script and rendered survey_validation.Rmd' \|\| echo "No changes to commit"
	git push origin \|\| echo "No changes to commit"

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