Merge branch 'hotfix/v3.5.1'

ACEnglish · Feb 17, 2023 · bc8bf84 · bc8bf84
2 parents f2d76a3 + c4468f5
commit bc8bf84
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diff --git a/repo_utils/test_files/answer_key/help.txt b/repo_utils/test_files/answer_key/help.txt
@@ -1,6 +1,6 @@
 usage: truvari [-h] CMD ...
 
-Truvari v4.0.0-dev Structural Variant Benchmarking and Annotation
+Truvari v3.5.1 Structural Variant Benchmarking and Annotation
 
 Available commands:
     bench         Performance metrics from comparison of two VCFs

diff --git a/truvari/__init__.py b/truvari/__init__.py
@@ -74,7 +74,7 @@
 :data:`truvari.SZBINTYPE`
 """
 
-__version__ = '4.0.0-dev'
+__version__ = '3.5.1'
 
 
 from truvari.annotations.af_calc import (

diff --git a/truvari/collapse.py b/truvari/collapse.py
@@ -132,6 +132,11 @@ def collapse_into_entry(entry, others, hap_mode=False):
                         "Unable to set FORMAT %s for sample %s", key, sample)
                     logging.warning("Kept entry: %s:%d %s", entry.chrom, entry.pos, entry.id)
                     logging.warning("Colap entry: %s:%d %s", o_entry.chrom, o_entry.pos, o_entry.id)
+                except KeyError:
+                    logging.debug("Unshared format %s in sample %s ignored for pair %s:%d %s %s:%d %s",
+                                  key, sample, entry.chrom, entry.pos, entry.id, o_entry.chrom,
+                                  o_entry.pos, o_entry.id)
+
 
     return entry, n_consolidate