Dockerfile.cellbase_web

FROM  opencb/cellbase
MAINTAINER  Milan Simonovic <mbsimonovic@gmail.com>

ENV TOMCAT_MAJOR 8
ENV TOMCAT_VERSION 8.0.39
ENV TOMCAT_TGZ_URL https://www.apache.org/dist/tomcat/tomcat-$TOMCAT_MAJOR/v$TOMCAT_VERSION/bin/apache-tomcat-$TOMCAT_VERSION.tar.gz
ENV CATALINA_HOME /opt/tomcat

# see https://www.apache.org/dist/tomcat/tomcat-8/KEYS
RUN gpg --keyserver pool.sks-keyservers.net --recv-keys \
    05AB33110949707C93A279E3D3EFE6B686867BA6 \
    07E48665A34DCAFAE522E5E6266191C37C037D42 \
    47309207D818FFD8DCD3F83F1931D684307A10A5 \
    541FBE7D8F78B25E055DDEE13C370389288584E7 \
    61B832AC2F1C5A90F0F9B00A1C506407564C17A3 \
    79F7026C690BAA50B92CD8B66A3AD3F4F22C4FED \
    9BA44C2621385CB966EBA586F72C284D731FABEE \
    A27677289986DB50844682F8ACB77FC2E86E29AC \
    A9C5DF4D22E99998D9875A5110C01C5A2F6059E7 \
    DCFD35E0BF8CA7344752DE8B6FB21E8933C60243 \
    F3A04C595DB5B6A5F1ECA43E3B7BBB100D811BBE \
    F7DA48BB64BCB84ECBA7EE6935CD23C10D498E23

RUN groupadd -r tomcat -g 999 && useradd -r -g tomcat -u 999 tomcat
RUN mkdir -p "$CATALINA_HOME" && chown tomcat:tomcat "$CATALINA_HOME"

USER tomcat
#ENV CATALINA_HOME /opt/tomcat
ENV PATH $CATALINA_HOME/bin:$PATH

WORKDIR $CATALINA_HOME

RUN set -x \
    && curl -fSL "$TOMCAT_TGZ_URL" -o tomcat.tar.gz \
    && tar -xvf tomcat.tar.gz --strip-components=1 \
    && rm bin/*.bat \
    && rm -rf webapps/* \
    && rm tomcat.tar.gz*

RUN cp /opt/cellbase/build/cellbase*.war webapps/ROOT.war

EXPOSE 8080

USER root
COPY configuration.json /opt/cellbase/
USER tomcat
ENV CELLBASE_HOME=/opt/cellbase

CMD ["catalina.sh", "run"]