From bde7c9e3925d4b9e7af80922c60f365e0f6a3507 Mon Sep 17 00:00:00 2001 From: jakob Date: Tue, 12 Nov 2024 13:54:15 +0100 Subject: [PATCH 1/3] check if working on windows again --- .github/workflows/run_tests_os.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/run_tests_os.yml b/.github/workflows/run_tests_os.yml index 823016477..f7b7d6bb2 100644 --- a/.github/workflows/run_tests_os.yml +++ b/.github/workflows/run_tests_os.yml @@ -8,8 +8,8 @@ jobs: run-tests: strategy: matrix: - # os: [ubuntu-latest, windows-latest, macos-latest] # fails on windows until https://github.com/MIC-DKFZ/nnUNet/issues/2396 is resolved - os: [ubuntu-latest, macos-latest] + os: [ubuntu-latest, windows-latest, macos-latest] # fails on windows until https://github.com/MIC-DKFZ/nnUNet/issues/2396 is resolved + # os: [ubuntu-latest, macos-latest] python-version: ["3.10"] runs-on: ${{ matrix.os }} From 644a812020d5a74984030e2e6e0c4c0151246bd6 Mon Sep 17 00:00:00 2001 From: jakob Date: Wed, 11 Dec 2024 11:53:33 +0100 Subject: [PATCH 2/3] update readme --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 41b29a27e..b7a8f1eed 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ Tool for segmentation of most major anatomical structures in any CT or MR image. It was trained on a wide range of different CT and MR images (different scanners, institutions, protocols,...) and therefore should work well on most images. A large part of the training dataset can be downloaded here: [CT dataset](https://doi.org/10.5281/zenodo.6802613) (1228 subjects) and [MR dataset](https://zenodo.org/doi/10.5281/zenodo.11367004) (298 subjects). You can also try the tool online at [totalsegmentator.com](https://totalsegmentator.com/) or as [3D Slicer extension](https://github.com/lassoan/SlicerTotalSegmentator). -**ANNOUNCEMENT: We recently added support for MR images. Try out by using the task `-ta total_mr` or see more details in our [paper](https://arxiv.org/abs/2405.19492).** +**ANNOUNCEMENT: We created a platform where anyone can help annotate more data to further improve TotalSegmentator: [TotalSegmentator Annotation Platform](https://annotate.totalsegmentator.com/admin_dashboard).** Main classes for CT: ![Alt text](resources/imgs/overview_classes_v2.png) From 66f36ab487c9a306fa19ab527cfd161b5de86166 Mon Sep 17 00:00:00 2001 From: jakob Date: Wed, 11 Dec 2024 11:53:56 +0100 Subject: [PATCH 3/3] update readme 2 --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b7a8f1eed..aab9a7fc7 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ Tool for segmentation of most major anatomical structures in any CT or MR image. It was trained on a wide range of different CT and MR images (different scanners, institutions, protocols,...) and therefore should work well on most images. A large part of the training dataset can be downloaded here: [CT dataset](https://doi.org/10.5281/zenodo.6802613) (1228 subjects) and [MR dataset](https://zenodo.org/doi/10.5281/zenodo.11367004) (298 subjects). You can also try the tool online at [totalsegmentator.com](https://totalsegmentator.com/) or as [3D Slicer extension](https://github.com/lassoan/SlicerTotalSegmentator). -**ANNOUNCEMENT: We created a platform where anyone can help annotate more data to further improve TotalSegmentator: [TotalSegmentator Annotation Platform](https://annotate.totalsegmentator.com/admin_dashboard).** +**ANNOUNCEMENT: We created a platform where anyone can help annotate more data to further improve TotalSegmentator: [TotalSegmentator Annotation Platform](https://annotate.totalsegmentator.com).** Main classes for CT: ![Alt text](resources/imgs/overview_classes_v2.png)