diff --git a/jupyter-nextflow/nextflow-welcome.html b/jupyter-nextflow/nextflow-welcome.html index cef7a8ee..05a9afd8 100644 --- a/jupyter-nextflow/nextflow-welcome.html +++ b/jupyter-nextflow/nextflow-welcome.html @@ -39,21 +39,25 @@
If you are new to Nextflow, visit nextflow.io for detailed information. + href=https://www.nextflow.io>nextflow.io for detailed information. + You can also learn more about using Nextflow in BRH Workspace in the BRH Documentation.
This workspace is set up to run Nextflow workflows in AWS Batch. Your
- Nextflow configuration must include the Batch queue, IAM role ARN and work
- directory that were created for you automatically. The sample configuration
- file will allow you to run simple workflows and can be adapted to your
+ Nextflow configuration must include the Batch queue (in your config file,
+ process.queue
), IAM role ARN (aws.batch.jobRole
), and work
+ directory (workDir
) that were created for you automatically. The sample config
+ file is already configured with these settings. It will allow you to run simple workflows and can be adapted to your
needs. To get started:
nextflow.config
file to persist, first double-click on the "pd" folder.
+ nextflow-welcome.html
+ cp
- ./data/sample-nextflow-config.txt ./nextflow.config
+ ../data/sample-nextflow-config.txt ./nextflow.config
nextflow run hello