conversion:NamedGraph

Note that conversion:NamedGraph is distinct from sd:NamedGraph. If you're trying to model named graphs, use sd:NamedGraphs. conversion:NamedGraph is only used within the context of specifying conversion results.

https://github.com/timrdf/csv2rdf4lod-automation/issues/331

tax_id,GeneID,GO_ID,Evidence,Qualifier,GO_term,PubMed,Category
9606,2,GO:0051056,TAS,-,regulation of small GTPase mediated signal transduction,-,Process

Jim is looking for TRiG like:

graph <http://purl.org/twc/lobd/source/ncbi-nlm-nih-gov/entrez_gene_go/2_in_GO:0051056#assertion> {
    <http://bio2rdf/geneid:2> sio:is_part_of <http://purl.org/obo/go/GO_0051056>.
    <http://purl.org/obo/go/GO_0051056> a <http://purl.org/obo/go/Process>.
}

graph <http://purl.org/twc/lobd/source/ncbi-nlm-nih-gov/entrez_gene_go/2_in_GO:0051056#supporting> {
    <http://purl.org/twc/lobd/source/ncbi-nlm-nih-gov/entrez_gene_go/2_in_GO:0051056> sio:has-evidence 
      [a <http://purl.org/go/evidence/TAS>].
}

Conversion before implementing conversion:NamedGraph

Without the new feature, we can get the same triples (shown below). We just need to work to get them into the correct graphs.

## To be #assertion
<http://bio2rdf/geneid:2> sio:is_part_of <http://purl.org/obo/go/GO_0051056> .

<http://purl.org/obo/go/GO_0051056>
   dcterms:identifier "0051056" ;
   a <http://purl.org/obo/go/Process> ;
   rdfs:label "0051056" .

<http://purl.org/obo/go/Process> dcterms:identifier "Process" ;
   rdfs:label "Process" .


## To be #supporting
<http://localhost/source/lebot/issue-331-target-ngs/2_in_GO:0051056>
   sio:has-evidence <http://localhost/source/lebot/dataset/issue-331-target-ngs/version/2013-May-31/evidence/2>;
.

<http://localhost/source/lebot/dataset/issue-331-target-ngs/version/2013-May-31/evidence/2> 
   a <http://purl.org/go/evidence/TAS> .
   
<http://purl.org/go/evidence/TAS> dcterms:identifier "TAS" ;
   rdfs:label "TAS" .

Specifying conversion:NamedGraph

The new conversion:in_graph enhancement property points to an instance of conversion:NamedGraph, which has a conversion:name_template. The pattern is similar to the implicit conversion:bundled_by enhancement, where the columns point to an instance that is further described instead of just providing a direct value to be interpreted by the converter.

:assertion                                           #### <--- A graph which can be inserted into
   a conversion:NamedGraph;
   conversion:name_template "[/s][d][#2]_in_GO:[#3]#assertion";
.

:supporting                                          #### <--- A graph which can be inserted into
   a conversion:NamedGraph;
   conversion:name_template "[/s][d][#2]_in_GO:[#3]#supporting";
.

:evidence_bundle
   a conversion:ImplicitBundle;
   conversion:property_name sio:has-evidence;
   conversion:name_template "[/sdv]evidence/[r]";
   #conversion:type_name     "http://purl.org/go/evidence/[#4]";
   conversion:in_graph :supporting;                  #### <--- Bundle indicates which graph to assert into
.
...
      conversion:enhance [
         conversion:domain_template "[/s][d]/[#2]_in_GO:[#3]";
         #conversion:domain_name     "Thing";
      ];
...
      conversion:enhance [
         ov:csvCol          3;
         ov:csvHeader       "GO_ID";
         conversion:bundled_by [ ov:csvCol 2 ];
         conversion:equivalent_property sio:is_part_of;
         conversion:interpret [
            conversion:regex          "^GO:";
            conversion:interpretation "";
         ];
         conversion:range_template "http://purl.org/obo/go/GO_[.]";
         conversion:range <http://purl.org/obo/go/Process>;
         conversion:in_graph :assertion;            #### <--- Column indicates which graph to assert into
      ];
...

Conversion after implementing conversion:NamedGraph

<http://localhost/source/lebot/issue-331-target-ngs/2_in_GO:0051056#supporting> {
   <http://localhost/source/lebot/issue-331-target-ngs/2_in_GO:0051056>
      sio:has-evidence <http://localhost/source/lebot/dataset/issue-331-target-ngs/version/2013-May-31/evidence/2> .
}
<http://localhost/source/lebot/issue-331-target-ngs/2_in_GO:0051056#supporting> {
   <http://localhost/source/lebot/dataset/issue-331-target-ngs/version/2013-May-31/evidence/2>
      a <http://purl.org/go/evidence/TAS> .

   <http://purl.org/go/evidence/TAS> dcterms:identifier "TAS" ;
      rdfs:label "TAS" .
}

<http://localhost/source/lebot/issue-331-target-ngs/2_in_GO:0051056#assertion> {
   <http://bio2rdf/geneid:2> sio:is_part_of <http://purl.org/obo/go/GO_0051056> .
   
   <http://purl.org/obo/go/GO_0051056>
      dcterms:identifier "0051056" ;
      a <http://purl.org/obo/go/Process> ;
      rdfs:label "0051056" .
}     
<http://localhost/source/lebot/issue-331-target-ngs/2_in_GO:0051056#assertion> {
   <http://purl.org/obo/go/Process> dcterms:identifier "Process" ;
      rdfs:label "Process" .
}