print-nodeset

#!/bin/sh
# usage: NodeSet
#  -n,--nodeset <arg>         NodeSet in [34,37,38,42] notation (required)
#  -nodes,--nodesfile <arg>   read graph nodes from the given nodes.txt file
#                             (required)
#  -p,--print                 print out the Nodes in the given NodeSet

NODESFILE=$1
NODESET=$2

## priorityoption doesn't matter, we're just looking at an FR with alpha, kappa
java -server -cp "build/install/pangenomics/lib/*" org.ncgr.pangenomics.genotype.NodeSet --print --nodesfile $NODESFILE --nodeset $NODESET