diff --git a/src/patterns/dosdp-dev/dislocatedAnatomicalEntity.yaml b/src/patterns/dosdp-dev/dislocatedAnatomicalEntity.yaml new file mode 100644 index 00000000..a9d77d16 --- /dev/null +++ b/src/patterns/dosdp-dev/dislocatedAnatomicalEntity.yaml @@ -0,0 +1,66 @@ +--- +pattern_name: dislocatedAnatomicalEntity + +pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/dislocatedAnatomicalEntity.yaml + +description: "Use this phenotype pattern when an anatomical entity developed in + its normal location, but later it is found outside of that original place or + position. Consider the alternative 'mislocalised PATO:0000628' positional + quality pattern when the anatomical entity is found outside of its usual or + proper place, because it developed in the wrong (ectopic) location." + +# examples: +# - http://purl.obolibrary.org/obo/HP_0001373 # Joint dislocation +# - http://purl.obolibrary.org/obo/HP_0002827 # Hip dislocation +# - http://purl.obolibrary.org/obo/MP_0030795 # joint dislocation +# - http://purl.obolibrary.org/obo/MP_0030796 # hip dislocation +# - http://purl.obolibrary.org/obo/MP_0030843 # elbow dislocation + +contributors: + - https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik + - https://orcid.org/0000-0003-4606-0597 # Susan Bello + - https://orcid.org/0000-0002-7356-1779 # Nicolas Matentzoglu + - https://orcid.org/0000-0002-7073-9172 # David Osumi-Sutherland + - https://orcid.org/0000-0002-6490-7723 # Anna V. Anagnostopoulos + +classes: + dislocated: PATO:0001852 + abnormal: PATO:0000460 + anatomical_entity: UBERON:0001062 + +relations: + characteristic_of: RO:0000052 + has_modifier: RO:0002573 + has_part: BFO:0000051 + +annotationProperties: + exact_synonym: oio:hasExactSynonym + +vars: + anatomical_entity: "'anatomical_entity'" + +name: + text: "%s dislocation" + vars: + - anatomical_entity + +annotations: + - annotationProperty: exact_synonym + text: "dislocation of %s" + vars: + - anatomical_entity + +def: + text: "Dislocation or displacement of %s from the place or position where it + developed." + vars: + - anatomical_entity + +equivalentTo: + text: "'has_part' some ( + 'dislocated' and + ('characteristic_of' some %s) and + ('has_modifier' some 'abnormal'))" + vars: + - anatomical_entity +...