From 56c7141d6970f18a414835e25a98a5f468e4a302 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Sun, 12 Apr 2015 13:19:00 -0700 Subject: [PATCH] feed alignemnt; perineal raphe structures. NT: scrotal sac --- uberon_edit.obo | 203 +++++++++++++++++++++++++++++++++++------------- 1 file changed, 150 insertions(+), 53 deletions(-) diff --git a/uberon_edit.obo b/uberon_edit.obo index 840a45b604..0acd96e840 100644 --- a/uberon_edit.obo +++ b/uberon_edit.obo @@ -35417,7 +35417,7 @@ is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital ridge synonym: "urethral groove" EXACT [] synonym: "urethral sulcus" EXACT [] -synonym: "sulcus urethralis primarius" EXACT LATIN [] +synonym: "sulcus urethralis primarius" EXACT LATIN [Wikipedia:Urethral_groove] xref: SCTID:361531004 ! Urethral groove [Term] @@ -40473,7 +40473,6 @@ xref: SCTID:280711000 ! Region of metatarsal xref: SCTID:370639003 ! Cannon region of equine hindlimb def: "A metapodium region that is part of a pes." [OBOL:automatic] xref: CALOHA:TS-2221 -xref: EMAPA:32940 ! metatarsus relationship: has_skeleton UBERON:0010545 ! metatarsus skeleton [Term] @@ -40563,6 +40562,7 @@ xref: galen:Metatarsal xref: SCTID:302532000 ! Entire metatarsal xref: UMLS:C0025584 {source="ncithesaurus:Metatarsal_Bone"} xref: EMAPA:36159 ! metatarsal bone +xref: EMAPA:32940 ! metatarsus subset: pheno_slim [Term] @@ -46817,6 +46817,7 @@ xref: Wikipedia:Temporal_muscle subset: uberon_slim synonym: "temporalis" EXACT [MA:0002390] synonym: "temporal muscle" EXACT [] +synonym: "jaw adductor muscle" BROAD [] synonym: "musculus temporalis" EXACT LATIN [FMA:TA, FMA:49006] xref: EHDAA:10565 ! temporalis xref: FMA:49006 ! Temporalis @@ -46845,27 +46846,56 @@ subset: pheno_slim [Term] id: UBERON:0011305 name: superficial part of temporalis -def: "The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia[FEED]" [http://www.feedexp.org] -synonym: "temporalis, superficial" EXACT [FEED:FEED] +def: "The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia" [MFMO:0000087] +synonym: "anterior temporal" EXACT [MFMO:0000087] +synonym: "temporal muscle anterolateral part" EXACT [MFMO:0000087] +synonym: "temporales" EXACT [MFMO:0000087] +synonym: "temporalis anterior head" EXACT [MFMO:0000087] +synonym: "temporalis pars anterior" EXACT [MFMO:0000087] +synonym: "temporalis pars superficialis" EXACT [MFMO:0000087] intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_superficial_part_of UBERON:0001598 ! temporalis muscle +relationship: attaches_to UBERON:0035108 {source="MFMO"} ! temporalis fascia +xref: MFMO:0000087 ! superficial temporalis muscle [Term] id: UBERON:0011306 name: deep part of temporalis -def: "The deep temporalis muscle is a separable part of the temporalis muscle that that attaches to the bony wall of the braincase and is deep to the superficial temporalis.[FEED]" [http://www.feedexp.org] -synonym: "temporalis, deep" EXACT [FEED:FEED] +def: "The deep temporalis muscle is a separable part of the temporalis muscle that that attaches to the bony wall of the braincase and is deep to the superficial temporalis." [MFMO:0000086] +synonym: "medial temporal" EXACT [MFMO:0000086] +synonym: "posterior temporal" EXACT [MFMO:0000086] +synonym: "temporal muscle posterior part" EXACT [MFMO:0000086] +synonym: "temporalis bbHauptmassebb" EXACT [MFMO:0000086] +synonym: "temporalis lamina profunda" EXACT [MFMO:0000086] +synonym: "temporalis pars posterior" EXACT [MFMO:0000086] +synonym: "temporalis pars profunda" EXACT [MFMO:0000086] +synonym: "temporalis posterior head" EXACT [MFMO:0000086] intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_deep_part_of UBERON:0001597 ! masseter muscle +xref: MFMO:0000086 ! deep temporalis muscle [Term] id: UBERON:0011307 name: suprazygomatic part of temporalis -def: "The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch.[FEED]" [http://www.feedexp.org] -synonym: "temporalis, suprazygomatic" EXACT [FEED:FEED] +def: "The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch." [MFMO:0000088] +synonym: "temporalis pars suprazygomatica" EXACT [MFMO:0000088] +synonym: "zygomatic temporalis" EXACT [MFMO:0000088] +xref: MFMO:0000088 ! suprazygomatic portion of the temporalis muscle is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle +[Term] +id: UBERON:0035108 +name: temporalis fascia +comment: Request new term but the definition needs revision. +synonym: "temporalis fascia" EXACT [FMA:53996] +synonym: "fascia of temporalis" EXACT [FMA:53996] +xref: FMA:53996 ! fascia of temporalis +synonym: "temporal fascia" EXACT [MFMO:0000105] +xref: MFMO:0000105 ! temporalis fascia +is_a: UBERON:0008982 ! fascia +relationship: part_of UBERON:0001456 {source="cjm"} ! face + [Term] id: UBERON:0011647 name: depressor mandibulae muscle @@ -88216,7 +88246,6 @@ intersection_of: part_of UBERON:0010707 ! appendage girdle complex relationship: part_of UBERON:0002091 {notes="UBERONREF:0000003"} ! appendicular skeleton xref: MA:0000688 ! limb bone relationship: contributes_to_morphology_of UBERON:0002091 ! appendicular skeleton -xref: EMAPA:32705 ! limb mesenchyme xref: EMAPA:35494 ! limb bone subset: pheno_slim @@ -105011,7 +105040,8 @@ synonym: "pontine central gray" EXACT [FMA:72470] xref: FMA:72470 ! Central gray substance of pons xref: NIFSTD:birnlex_799 ! Central gray substance of pons xref: MBA:898 ! Pontine central gray -is_a: UBERON:0035011 ! central gray substance +intersection_of: UBERON:0035011 ! central gray substance +intersection_of: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formation relationship: mutually_spatially_disjoint_with UBERON:0007632 {source="ABA"} ! Barrington's nucleus relationship: mutually_spatially_disjoint_with UBERON:0002143 {source="ABA"} ! dorsal tegmental nucleus @@ -105036,7 +105066,8 @@ synonym: "medullary central gray substance" EXACT [FMA:72595] synonym: "central gray matter" EXACT [NIFSTD:birnlex_2638] xref: FMA:72595 ! Central gray substance of medulla xref: NIFSTD:birnlex_2638 ! Central gray substance of medulla -is_a: UBERON:0035011 ! central gray substance +intersection_of: UBERON:0035011 ! central gray substance +intersection_of: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata xref: UMLS:C0262207 {source="NIFSTD:birnlex_2638"} synonym: "CGM" BROAD ABBREVIATION [NIFSTD:NeuroNames_abbrevSource, NIFSTD:birnlex_2638] @@ -105061,9 +105092,9 @@ synonym: "periaqueductal gray" EXACT [FMA:74510] synonym: "periaqueductal gray matter" EXACT [FMA:74510] synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510] synonym: "periaqueductal grey substance" EXACT [FMA:74510] -synonym: "griseum centrale" EXACT [NIFSTD:birnlex_973] -synonym: "substantia grisea centralis" EXACT [NIFSTD:birnlex_973] -synonym: "periaquectuctal grey" EXACT DUBIOUS [MA:0002895, https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376] +synonym: "griseum centrale" BROAD [NIFSTD:birnlex_973] +synonym: "substantia grisea centralis" BROAD [NIFSTD:birnlex_973] +synonym: "periaquectuctal grey" RELATED DUBIOUS [MA:0002895, https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376] synonym: "periaqueductal grey matter" EXACT [EV:0100249] xref: FMA:74510 ! Central gray substance of midbrain xref: NIFSTD:birnlex_973 ! Central gray substance of midbrain @@ -105080,7 +105111,8 @@ xref: MESH:A08.186.211.132.659.822.595 ! periaqueductal gray xref: EV:0100249 ! periaqueductal grey matter xref: MBA:795 ! Periaqueductal gray xref: BM:MB-PAG ! periaqueductal gray -is_a: UBERON:0002308 ! nucleus of brain +intersection_of: UBERON:0035011 ! central gray substance +intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum relationship: mutually_spatially_disjoint_with UBERON:0002696 {source="ABA"} ! cuneiform nucleus relationship: mutually_spatially_disjoint_with UBERON:0002141 {source="ABA"} ! parvocellular oculomotor nucleus @@ -120806,21 +120838,18 @@ relationship: present_in_taxon NCBITaxon:28376 ! Anolis relationship: never_in_taxon NCBITaxon:9606 {source="cjm"} ! Homo sapiens [Term] -id: UBERON:0035093 +id: UBERON:0035093 ! extensor caudae muscle name: extensor caudae muscle synonym: "caudal extensor muscle" EXACT [] is_a: UBERON:0035091 {source="PMID:22753107"} ! extrinsic post-anal tail muscle -intersection_of: UBERON:0000311 ! extensor muscle -intersection_of: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0035094 name: extensor caudae medialis muscle -def: "A muscle that originates via thin tendons from the distal and dorsal aspects of the neural spines (Fig. 3A). The tendons course proximomedially to distolaterally and give rise to fleshy fibers that insert onto the lateral aspect of the neural arches of each of the vertebrae it crosses. The m. extensor caudae medialis is a continuation of m. semispinalis dorsi into the tail." [PMID:22753107] +def: "A muscle that originates via thin tendons from the distal and dorsal aspects of the neural spines. The tendons course proximomedially to distolaterally and give rise to fleshy fibers that insert onto the lateral aspect of the neural arches of each of the vertebrae it crosses. The m. extensor caudae medialis is a continuation of m. semispinalis dorsi into the tail." [PMID:22753107] synonym: "extensor caudae medialis" EXACT [] synonym: "M. externsor caudae medialis" EXACT [] -intersection_of: UBERON:0000311 ! extensor muscle -intersection_of: part_of UBERON:0006076 ! caudal region of vertebral column +intersection_of: UBERON:0035093 ! extensor caudae muscle intersection_of: has_muscle_origin UBERON:0001076 ! neural spine intersection_of: has_muscle_insertion UBERON:0003861 ! neural arch @@ -120830,8 +120859,7 @@ name: extensor caudae lateralis muscle def: "A muscle that originates via a robust tendon from a tuberosity on the cranial aspect of the iliac crest and via fleshy fibers from the caudoventral aspect of the pelvis, the lateral aspects of the transverse processes of Ca2-8 or 9, and the horizontal intramuscular septum." [PMID:22753107] synonym: "extensor caudae lateralis" EXACT [] synonym: "M. externsor caudae lateralis" EXACT [] -intersection_of: UBERON:0000311 ! extensor muscle -intersection_of: part_of UBERON:0006076 ! caudal region of vertebral column +intersection_of: UBERON:0035093 ! extensor caudae muscle intersection_of: has_muscle_origin UBERON:0014437 ! iliac crest intersection_of: has_muscle_insertion UBERON:0035096 ! fascia of tail @@ -135397,7 +135425,6 @@ def: "Any collection of muscles that is part of a perineum [Automatically genera synonym: "perineal muscles" EXACT [FMA:71295] synonym: "perineal muscles set" EXACT [FMA:71295] xref: FMA:71295 ! Musculature of perineum -xref: EMAPA:18923 ! perineal body muscle intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0002356 ! perineum synonym: "musculi perinei" EXACT LATIN [FMA:TA, FMA:71295] @@ -137778,7 +137805,7 @@ xref: UMLS:C0226153 {source="ncithesaurus:Infraorbital_Artery"} [Term] id: UBERON:0006718 name: medial pterygoid muscle -def: "The medial pterygoid (or internal pterygoid muscle), is a thick, quadrilateral muscle of mastication. The mandibular branch of the fifth cranial nerve, the trigeminal nerve, innervates the medial pterygoid muscle." [Wikipedia:Medial_pterygoid_muscle] +def: "The medial pterygoid is a pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to the medial pterygoid and attaches to the cranial base and the medial side of the mandibular angle." [MFMO:0000083] xref: Wikipedia:Medial_pterygoid_muscle synonym: "internal pterygoid muscle" RELATED [] synonym: "internal pterygoid" RELATED [Wikipedia:Medial_pterygoid_muscle] @@ -137794,20 +137821,23 @@ xref: FMA:49011 ! medial pterygoid xref: MA:0002361 ! pterygoid medialis xref: EMAPA:25141 ! medial pterygoid xref: BTO:0005226 ! medial pterygoid muscle -is_a: UBERON:0006720 ! pterygoid muscle xref: SCTID:244771003 ! Entire medial pterygoid muscle xref: ncithesaurus:Internal_Pterygoid_Muscle ! Internal Pterygoid Muscle -relationship: has_muscle_insertion UBERON:0001684 {source="dbpedia", notes="medial angle of the mandible"} ! mandible +is_a: UBERON:0006720 ! pterygoid muscle +relationship: has_muscle_origin UBERON:0002517 {source="MFMO"} ! basicranium +relationship: has_muscle_insertion UBERON:0004657 {source="MFMO"} ! mandible condylar process relationship: innervated_by UBERON:0000375 {source="dbpedia", notes="mandibular nerve via nerve to medial pterygoid"} ! mandibular nerve property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/e/ec/Musculuspterygoideusmedialis.png property_value: external_definition "The medial pterygoid is a pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to the medial pterygoid and attaches to the cranial base and the medial side of the mandibular angle.[FEED]" xsd:string {ontology="FEED", date_retrieved="2012-07-02", url="http://www.feedexp.org"} xref: UMLS:C1512882 {source="ncithesaurus:Internal_Pterygoid_Muscle"} subset: pheno_slim +xref: MFMO:0000083 ! medial pterygoid muscle [Term] id: UBERON:0006719 name: lateral pterygoid muscle def: "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and temporomandibular joint (TMJ) capsule, and the cranial base." [MFMO:0000074] +comment: Action notes: only masticatory muscle that depresses mandible (opens jaw) xref: Wikipedia:Lateral_pterygoid_muscle synonym: "external pterygoid muscle" EXACT [MFMO:0000074] synonym: "lateral pteregoid" EXACT [Wikipedia:Lateral_pterygoid_muscle, FEED:rd] @@ -137840,11 +137870,13 @@ property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/b property_value: external_definition "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and TMJ capsule, and the cranial base.[FEED]" xsd:string {ontology="FEED", date_retrieved="2012-07-02", url="http://www.feedexp.org"} xref: UMLS:C1517045 {source="ncithesaurus:External_Pterygoid_Muscle"} subset: pheno_slim +xref: MFMO:0000074 ! lateral pterygoid muscle [Term] id: UBERON:0006720 ! pterygoid muscle alt_id: UBERON:3010730 ! pterygoideus name: pterygoid muscle +comment: Taxon notes: We use this class to group the medial and lateral pterygoids of mammals as well as the pterygoideus of amphibians and reptiles. Note that FEED includes a distinct class for the reptilian pterygoideus. In future, this branch of the ontology may be refined to include a more complete classification of jaw adductors across gnathostomes. See for example doi:10.1134/S1062359010090050 subset: grouping_class synonym: "pterygoid" RELATED INCONSISTENT [EMAPA:25139] synonym: "pterygoideus" RELATED [] @@ -137853,7 +137885,7 @@ xref: GAID:147 ! pterygoid muscle xref: EMAPA:25139 ! pterygoid xref: MESH:A02.633.567.600.700 ! pterygoid muscle is_a: UBERON:0003681 ! masticatory muscle -relationship: innervated_by UBERON:0000375 {source="dbpedia", notes="generalized"} ! mandibular nerve +relationship: innervated_by UBERON:0000375 {source="FEED", source="Wikipedia", notes="generalized from lateral and medial"} ! mandibular nerve relationship: has_muscle_insertion UBERON:0001684 {source="dbpedia", notes="generalized"} ! mandible xref: SCTID:244770002 ! Entire pterygoid muscle xref: AAO:0010730 ! pterygoideus @@ -157691,12 +157723,15 @@ property_value: axiom_lost_from_external_ontology "relationship loss: part_of ot [Term] id: UBERON:0006632 name: musculo-phrenic artery +def: "An artery with its origin in the lateral terminal branch of the internal thoracic artery, with distribution to the diaphragm and the intercostal muscles, and with anastomoses to the branches of the pericardiacophrenic and inferior phrenic." [http://medical-dictionary.thefreedictionary.com/musculophrenic+artery] +xref: Wikipedia:Musculophrenic_artery ! musculophrenic artery synonym: "musculophrenic artery" EXACT [FMA:10645] xref: FMA:10645 ! musculophrenic artery xref: EMAPA:19215 ! musculo-phrenic artery is_a: UBERON:0004573 ! systemic artery -relationship: branching_part_of UBERON:0002456 ! internal thoracic artery -relationship: part_of UBERON:0002456 ! internal thoracic artery +intersection_of: UBERON:0001637 ! artery +intersection_of: branching_part_of UBERON:0002456 ! internal thoracic artery +intersection_of: supplies UBERON:0001103 ! diaphragm xref: SCTID:244242003 ! Entire musculophrenic artery [Term] @@ -158292,7 +158327,6 @@ synonym: "central tendon of perineum" RELATED [Wikipedia:Perineal_body] synonym: "central tendon of perineum" EXACT [FMA:20274] xref: FMA:20274 ! Perineal body xref: EMAPA:17892 ! perineal body -xref: EMAPA:17892 ! perineal body is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0002356 ! perineum xref: SCTID:367754000 ! Entire perineal body @@ -158301,14 +158335,13 @@ synonym: "centrum tendineum perinei" RELATED LATIN [Wikipedia:Perineal_body] property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png [Term] -id: UBERON:0006655 -name: septum of scrotum -synonym: "Scrotal septum" EXACT [FMA:20729] -xref: FMA:20729 ! Septum of scrotum -xref: EMAPA:29745 ! septum of scrotum -is_a: UBERON:0003037 ! septum -relationship: part_of UBERON:0001300 ! scrotum -xref: SCTID:279591002 ! Entire scrotal septum +id: UBERON:0035103 +name: perineal body smooth muscle muscle tissue +intersection_of: UBERON:0001135 ! smooth muscle tissue +intersection_of: part_of UBERON:0006654 ! perineal body +relationship: part_of UBERON:0004486 ! musculature of perineum +xref: EMAPA:18923 ! perineal body muscle +synonym: "perineal body muscle" EXACT [EMAPA:18923] [Term] id: UBERON:0015479 @@ -158817,9 +158850,9 @@ xref: GAID:250 ! atlanto-axial joint xref: ncithesaurus:Atlanto-axial_Joint ! Atlanto-Axial Joint xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA ! atlanto axial joint xref: MESH:A02.835.583.097 ! atlanto-axial joint -is_a: UBERON:0000982 ! skeletal joint -relationship: connects UBERON:0001092 ! vertebral bone 1 -relationship: connects UBERON:0001093 ! vertebral bone 2 +intersection_of: UBERON:0000982 ! skeletal joint +intersection_of: connects UBERON:0001092 ! vertebral bone 1 +intersection_of: connects UBERON:0001093 ! vertebral bone 2 relationship: part_of UBERON:0011138 ! post-cranial axial skeletal system xref: SCTID:361832004 ! Entire atlantoaxial joint property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png @@ -158925,11 +158958,12 @@ synonym: "aponeurosis of epicranius" EXACT [FMA:46768] [Term] id: UBERON:0006662 name: musculo-phrenic vein +def: " Any of the veins that accompany the musculophrenic artery and drain blood from the upper abdominal wall, the lower intercostal spaces, and the diaphragm." [http://medical-dictionary.thefreedictionary.com/musculophrenic+vein] xref: FMA:4732 ! Musculophrenic vein xref: EMAPA:19222 ! musculo-phrenic vein -is_a: UBERON:0001638 ! vein -relationship: part_of UBERON:0001589 ! internal thoracic vein -relationship: tributary_of UBERON:0001589 {source="FMA/obol"} ! internal thoracic vein +intersection_of: UBERON:0001638 ! vein +intersection_of: tributary_of UBERON:0001589 ! internal thoracic vein +intersection_of: drains UBERON:0001103 ! diaphragm xref: SCTID:1895000 ! Entire musculophrenic vein synonym: "musculophrenic vein" EXACT [FMA:4732] @@ -158951,10 +158985,9 @@ is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001594 ! azygos vein relationship: develops_from UBERON:0008267 {source="ISBN-10:0443065837"} ! left supracardinal vein relationship: tributary_of UBERON:0001594 {source="FMA/obol"} ! azygos vein -synonym: "vena hemiazygos" EXACT LATIN [FMA:TA, FMA:4944] xref: SCTID:244408009 ! Entire hemiazygous vein xref: EHDAA2:0004534 ! hemiazygous vein -synonym: "vena hemiazygos" RELATED LATIN [Wikipedia:Hemiazygos_vein] +synonym: "vena hemiazygos" EXACT LATIN [Wikipedia:Hemiazygos_vein] property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png [Term] @@ -161922,15 +161955,20 @@ synonym: "CNH" EXACT ABBREVIATION [XAO:0000108] [Term] id: UBERON:0007121 -name: dermatome segment of skin -def: "A dermatome is an area of skin that is mainly supplied by a single spinal nerve. There are eight cervical nerves, twelve thoracic nerves, five lumbar nerves and five sacral nerves. Each of these nerves relays sensation (including pain) from a particular region of skin to the brain[WP]." [Wikipedia:Dermatome_(anatomy)] +name: skin nerve field +def: "A zone of skin that is mainly innervated by a single sensory nerve. A nerve field innervated by exactly one dorsal root is called a dermatome." [UBERON:cjm] +comment: Examples: V1, V2 and V3 distributions of the trigeminal nerve; the zone of skin innervated by S2 +xref: Wikipedia:Peripheral_nerve_field xref: Wikipedia:Dermatome_(anatomy) +synonym: "peripheral nerve field" RELATED [Wikipedia:Dermatome_(anatomy)] +synonym: "dermatome segment of skin" RELATED [Wikipedia:Dermatome_(anatomy)] synonym: "dermatome" RELATED [Wikipedia:Dermatome_(anatomy)] synonym: "dermatomic area" RELATED [Wikipedia:Dermatome_(anatomy)] property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Dermatomes_and_cutaneous_nerves_-_posterior.png/230px-Dermatomes_and_cutaneous_nerves_-_posterior.png xref: FMA:80301 ! dermatome segment of skin xref: SCTID:244023005 ! Dermatome is_a: UBERON:0000014 ! zone of skin +relationship: innervated_by UBERON:0001027 ! sensory nerve disjoint_from: UBERON:0004016 ! dermatome [Term] @@ -172034,7 +172072,7 @@ def: "The interdental plate refers to the bone-filled mesial-distal region betwe xref: Wikipedia:Interdental_plate property_value: taxon_notes "In paleobiology, the presence or absence of the interdental plate can determine the place of an animal in the evolutionary scale, and paleontologists use the interdental plate when trying to classify a new specimen. Thecodont reptiles and theropod dinosaur fossils have an interdental plate, whereas acrodont reptiles such as Sphenodontia do not.[3] Its presence in Archaeopteryx, an extinct avian, resulted in the proposal of the dinosaur-bird connection" xsd:string {source="WP"} intersection_of: UBERON:0005913 ! zone of bone organ -intersection_of: part_of UBERON:0012111 ! diastema +intersection_of: located_in UBERON:0012111 ! diastema relationship: part_of UBERON:0001708 ! jaw skeleton [Term] @@ -177964,17 +178002,76 @@ xref: FMA:61523 ! hypothenar eminence xref: SCTID:362749004 ! Hypothenar region subset: pheno_slim +[Term] +id: UBERON:0035105 +name: sac of scrotum +def: "Any of the two testis-carrying compartments of the scrotum." [UBERON:cjm] +is_a: UBERON:0000063 ! organ subunit +relationship: part_of UBERON:0001300 ! scrotum +relationship: has_part UBERON:0000473 {cardinality="1"} ! testis +xref: FMA:18251 ! scrotal sac +synonym: "scrotal sac" EXACT [FMA:18251] +synonym: "scrotal comartment" EXACT [] +synonym: "testis comartment" EXACT [] + +[Term] +id: UBERON:0006655 +name: septum of scrotum +def: "an incomplete wall of connective tissue and nonstriated muscle (dartos fascia) dividing the scrotum into two sacs, each containing a testis." [http://www.medilexicon.com/medicaldictionary.php?t=81109] +synonym: "scrotal septum" EXACT [FMA:20729] +synonym: "septum scroti" EXACT LATIN [] +xref: FMA:20729 ! Septum of scrotum +xref: EMAPA:29745 ! septum of scrotum +intersection_of: UBERON:0000060 ! anatomical wall +intersection_of: intersects_midsagittal_plane_of UBERON:0001300 ! scrotum +intersection_of: adjacent_to UBERON:0035105 ! sac of scrotum +relationship: part_of UBERON:0001300 ! scrotum +relationship: has_part UBERON:0013718 ! dartos muscle +relationship: has_part UBERON:0002384 ! connective tissue +xref: SCTID:279591002 ! Entire scrotal septum + +[Term] +id: UBERON:0035106 +name: raphe of perineum +def: "The perineal raphe extends from the anus, through the mid-line of the scrotum (scrotal raphe) and upwards through the posterior mid-line aspect of the penis (penile raphe)." [Wikipedia:Perineal_raphe, Wikipedia:Perineal_raphe] +comment: Development notes: It is the result of a fetal developmental phenomenon whereby the scrotum (the developmental equivalent of the labia in females) and penis close toward the midline and fuse. The resulting ridge of tissue is evident as the perineal raphe +synonym: "raphe perinealis" EXACT LATIN [Wikipedia:Perineal_raphe] +synonym: "raphe perinei" EXACT LATIN [Wikipedia:Perineal_raphe] +relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital fold +xref: Wikipedia:Perineal_raphe ! perineal raphe +synonym: "perineal raphe" EXACT [FMA:20244] +intersection_of: UBERON:0034929 ! external soft tissue zone +intersection_of: intersects_midsagittal_plane_of UBERON:0002356 ! perineum +intersection_of: has_quality PATO:0002358 ! ridged +xref: FMA:20244 ! perineal raphe + [Term] id: UBERON:0017732 name: raphe of scrotum +def: "A ridge of tissue that extends along the midline of the scrotum." [HPO:probinson] +comment: Development notes: The scrotal raphe is formed when the embryonic, urethral groove closes (week 12 in humans) synonym: "scrotal raphe" EXACT [FMA:75130] -intersection_of: UBERON:0003037 ! septum -intersection_of: part_of UBERON:0001300 ! scrotum +intersection_of: UBERON:0034929 ! external soft tissue zone +intersection_of: intersects_midsagittal_plane_of UBERON:0001300 ! scrotum +intersection_of: has_quality PATO:0002358 ! ridged +relationship: part_of UBERON:0001300 ! scrotum +relationship: part_of UBERON:0035106 ! perineal raphe +relationship: develops_from UBERON:0013241 ! embryonic urethral groove xref: FMA:75130 ! raphe of scrotum xref: SCTID:279583006 ! Entire scrotal raphe -def: "A septum that is part of a scrotum." [OBOL:automatic] subset: pheno_slim +[Term] +id: UBERON:0035104 +name: raphe of penis +synonym: "penile raphe" EXACT [FMA:19646] +xref: FMA:19646 ! raphe of penis +intersection_of: UBERON:0034929 ! external soft tissue zone +intersection_of: intersects_midsagittal_plane_of UBERON:0000989 ! penis +intersection_of: has_quality PATO:0002358 ! ridged +relationship: part_of UBERON:0035106 ! perineal raphe +relationship: part_of UBERON:0000989 ! penis + [Term] id: UBERON:0018229 name: renin-angiotensin system