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About Me... |
I am the Associate Director of Data Science at the Critical Path Institute, where we maximize the value of rare disease patient-level data through curation, standardization, and sharing; integration across diverse data sources; and the creation of drug development tools. My focus is on applying my expertise in ontology development, data standards, and annotation to lead a team of data scientists in creating and implementing a data curation pipeline using the organization’s knowledge graph. I am also a curator for the Mondo Disease Ontology, a semantic standard for disease classifications and definitions. Additionally, I actively contribute to educational initiatives on data management best practices and data science, including through the OBO Academy.
- Co-Chair, GA4GH Rare Disease Community of Interest
- OBO Foundry Operations Committee member
- Monarch Disease Ontology (Mondo)
- Human Phenotype Ontology
- Cell Ontology
- Phenotype and Trait Ontology
- Environmental Exposure Ontology
- Unified Phenotype Ontology (uPheno)
- Contributor Role Ontology
- OBO Academy - Self paced ontology engineering training
- Ontologies 101 Presentations (see Workshops page)
- Monarch Initiative: a system that allows for cross-species disease discovery
- Gabriella Miller Kids First Data Resource: a data resource portal containing data about pediatric cancers and structural abnormalities
- CRAFT corpus: The Colorado Richly Annotated Full Text Corpus (CRAFT) is a manually annotated corpus consisting of 67 full-text biomedical journal articles.
- Center for Cancer Data Harmonization: The CCDH worked with the National Cancer Institute Cancer Research Data Commons to make cancer research data more useful and accessible.