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Supported Data Types
mksamur edited this page Jul 14, 2014
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| Data Type (Parameter) | Description |
| Clinic | Provides clinical information for each sample. Clinical information may include stage, survival time, sex, age and more. |
| RNAseq_Gene or/and RNAseq2_Gene_Norm | Gene level expression data from RNA-seq platforms. This parameter provides raw counts and normalized values. Firehose provides 2 different algorithms for RNAseq data processing. (Data types can be specified by using RNAseqNorm and RNAseq2Norm parameters) |
| miRNASeq_Gene | miRNA expression levels from next generation sequencing platforms |
| CNA_SNP | Segmented copy number alterations (in somatic cells) |
| CNV_SNP | Segmented copy number variations (in germline cells) |
| CNA_Seq | Copy number alterations provided by next generation sequencing platforms |
| CNA_CGH | Copy number alterations provided by CGH array platforms |
| Methylation | Methylation data provided by array platforms |
| Mutation | Gene level mutation information matrix |
| mRNA_Array | Gene level expression data provided by array platforms |
| miRNA_Array | miRNA expression data provided by array platforms |
| RPPA | Reverse phase protein array (RPPA) expression |