NAMESPACE

# Generated by roxygen2: do not edit by hand

export(bedGraphFromGR)
export(filterByScore)
export(findAllOverlap)
export(findOverlapAsClusters)
export(getTSSinUCSCFormatFromEnsemblGTF)
export(grFromBedFile)
export(grSortedSimplifiedFromNarrowPeak)
export(narrowPeakDFFromGR)
export(overlap2GR)
import(usefulLDfunctions)
importFrom(BiocGenerics,as.data.frame)
importFrom(BiocGenerics,subset)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,resize)
importFrom(combinat,combn)
importFrom(combinat,permn)
importFrom(igraph,add_vertices)
importFrom(igraph,components)
importFrom(igraph,graph_from_edgelist)
importFrom(igraph,vcount)
importFrom(rtracklayer,readGFF)
importFrom(usefulLDfunctions,subsetByNamesOrIndices)