diff --git a/conf/data/data.config b/conf/data/data.config index ab6f7e5..fe5948d 100644 --- a/conf/data/data.config +++ b/conf/data/data.config @@ -1,6 +1,6 @@ // If there is any data that needs to be included in the config, it should be placed here using "${params.reference_data_bucket}/path/to/data" params { - exomiser_profile{ + exomiser_data_profile{ 'test'{ data_bundle = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/hg38" exomiser_phenotype_data = "${params.reference_data_bucket}/pipelines/exomiser/very_fake/2102_phenotype" diff --git a/main.nf b/main.nf index c527517..cb7b2c9 100644 --- a/main.nf +++ b/main.nf @@ -128,7 +128,7 @@ ch_combined = ch_vcf_paths2.join(ch_to_join, by: 0).view() ---------------------------------------------------*/ if (!params.data_bundle && params.exomiser_profile_files){ - exomiser_data=params.exomiser_profile[params.exomiser_profile_files].data_bundle + exomiser_data=params.exomiser_data_profile[params.exomiser_profile_files].data_bundle Channel.fromPath("${params.exomiser_data}") .set{ch_exomiser_data } }else{ diff --git a/nextflow.config b/nextflow.config index 05fe218..2b4ea51 100644 --- a/nextflow.config +++ b/nextflow.config @@ -94,6 +94,7 @@ profiles { } includeConfig 'conf/resources.config' +includeConfig 'conf/data/data.config' process { echo = params.echo