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resources.Rmd
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---
title: "Resources"
base_url: https://kaijagahm.netlify.app/resources.html
preview: resourcesImages/resourcesPreview.png
description: |
Links to other people's writings, tutorials, etc. that I've found helpful.
author:
- name: Kaija Gahm
date: "`r Sys.Date()`"
twitter:
creator: "@kaijagahm"
output:
distill::distill_article:
self_contained: false
highlight: kate
fig_caption: false
toc: true
toc_float: true
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
```
This is basically my Twitter bookmarks section in a more permanent and accessible format.
## R and Data Science
![RStudio Community](resourcesImages/rstudioCommunity.png){width="75%"}
[RStudio Community](https://community.rstudio.com/) is, on the whole, a much more friendly and helpful place to ask R-related questions than e.g. StackOverflow or some other online forums.
---
![Happy Git with R](resourcesImages/happyGitWithR.png){width=85%}
[Happy Git with R](https://happygitwithr.com/) by Jenny Bryan, Jim Hester, and the STAT 545 TA's. This is the authoritative guide to using Git with R, and I think I open it every single time I need to use Git.
---
![The Distillery](resourcesImages/distillery.png){width=50%}
[The Distillery](https://jhelvy.github.io/distillery/), a showcase of websites built with Distill (including this one!) Created by John Helveston.
---
![Guide to `stat_` layers](resourcesImages/statLayers.png){width=75%}
[Guide to `stat_` layers](https://yjunechoe.github.io/posts/2020-09-26-demystifying-stat-layers-ggplot2/) in ggplot by June Choe
---
![An introduction to hierarchical modeling](resourcesImages/mfviz.png){width=80%}
[An introduction to hierarchical modeling](http://mfviz.com/hierarchical-models/) (aka mixed models)--scrolling viz by Michael Freeman that does a great job explaining variance partitioning.
---
## Data Visualization
![A `ggplot2` Tutorial for Beautiful Plotting in R](resourcesImages/cedScherer.png){width=100%}
[A `ggplot2` Tutorial for Beautiful Plotting in R](https://www.cedricscherer.com/2019/08/05/a-ggplot2-tutorial-for-beautiful-plotting-in-r) by Cédric Scherer
---
![The Evolution of a ggplot](resourcesImages/cedScherer_evolGgplot.png){width=75%}
[The Evolution of a ggplot](https://www.cedricscherer.com/2019/05/17/the-evolution-of-a-ggplot-ep.-1/#polish), also by Cédric Scherer
---
![Some very cool weather charts](resourcesImages/tarasKaduk_weather.jpeg){width=50%}
[Some very cool weather charts](https://twitter.com/taraskaduk/status/1372611431468826632) by Taras Kaduk
---
![Creating color palettes](resourcesImages/corporateColors.png){width=75%}
[Creating color palettes](https://drsimonj.svbtle.com/creating-corporate-colour-palettes-for-ggplot2) for ggplot, by Simon Jackson
---
## Reproducibility and Open Science
![Project-oriented Workflow](resourcesImages/projectOriented.jpeg){width=100%}
Jenny Bryan's legendary article on keeping a [project-oriented workflow](https://www.tidyverse.org/blog/2017/12/workflow-vs-script/): I go back to this all. the. time.
---
![SORTEE](resourcesImages/sortee.png){width=75%}
[SORTEE](sortee.org) (Society for open, reliable, and transparent ecology & evolutionary biology) is a new-ish society working on reproducibility/open science in the EEB field.
---
![What to do when you don't trust your data anymore](resourcesImages/pruitt.png){width=100%}
[What to do when you don't trust your data anymore](https://laskowskilab.faculty.ucdavis.edu/2020/01/29/retractions/) by Kate Laskowski, discussing the Pruitt retraction situation.
See also [17 Months](http://ecoevoevoeco.blogspot.com/2021/05/17-months.html) by Daniel Bolnick, examining the whole process of auditing the Pruitt papers after the work was finished.
---
![Keeping a Paper Trail: Data Management Skills for Reproducible Science](resourcesImages/dataLifecycle.png){width=75%}
Also by Kate Laskowski: [Keeping a Paper Trail: Data Management Skills for Reproducible Science](https://laskowskilab.faculty.ucdavis.edu/2020/08/03/keeping-a-paper-trail-data-management-skills-for-reproducible-science/)
---
## Utilities
![Twitter card validator](resourcesImages/twitterCardValidator.png){width=80%}
When I was having trouble getting my links to display the correct preview image on Twitter, [Ijeamaka Anyene](https://ijeamaka-anyene.netlify.app/) referred me to the [Twitter Card Validator](https://cards-dev.twitter.com/validator), where you can test your links' preview images before posting them.
## Miscellaneous Cool Things on the Internet
![Ask a Manager](resourcesImages/askAManager.png){width=75%}
[Ask a Manager](https://www.askamanager.org/) is fun reading, and helps me internalize ideas about what a healthy workplace looks like.
---
![Map of carbon footprint by location](resourcesImages/carbonFootprint.png){width=70%}
[Map of carbon footprint by location](https://twitter.com/zoningwonk/status/1385260880909193218), debunking the idea that living in a rural area is more eco-friendly.
---
![Interactive city road map-making tool](resourcesImages/Somerville.png){width=85%}
[Interactive city road map-making tool](https://anvaka.github.io/city-roads/) by Andrei Kashcha