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accelerated_sequence_clustering_wrap.cxx
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/* ----------------------------------------------------------------------------
* This file was automatically generated by SWIG (https://www.swig.org).
* Version 4.1.1
*
* Do not make changes to this file unless you know what you are doing - modify
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* ----------------------------------------------------------------------------- */
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/* -----------------------------------------------------------------------------
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You can use the SWIGRUNTIME and SWIGRUNTIMEINLINE macros for
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Flags/methods for returning states.
The SWIG conversion methods, as ConvertPtr, return an integer
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Use the following macros/flags to set or process the returning
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Of course, returning the plain '0(success)/-1(fail)' still works, but you can be
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Finally, if the SWIG_CASTRANK_MODE is enabled, the result code
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int food(double)
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SWIGINTERNINLINE int SWIG_CheckState(int r) {
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#include <string.h>
#ifdef __cplusplus
extern "C" {
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typedef void *(*swig_converter_func)(void *, int *);
typedef struct swig_type_info *(*swig_dycast_func)(void **);
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swig_dycast_func dcast; /* dynamic cast function down a hierarchy */
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int owndata; /* flag if the structure owns the clientdata */
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/* Structure to store a type and conversion function used for casting */
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swig_converter_func converter; /* function to cast the void pointers */
struct swig_cast_info *next; /* pointer to next cast in linked list */
struct swig_cast_info *prev; /* pointer to the previous cast */
} swig_cast_info;
/* Structure used to store module information
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size_t size; /* Number of types in this module */
struct swig_module_info *next; /* Pointer to next element in circularly linked list */
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swig_cast_info **cast_initial; /* Array of initially generated casting structures */
void *clientdata; /* Language specific module data */
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/*
Compare two type names skipping the space characters, therefore
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SWIGRUNTIME int
SWIG_TypeNameComp(const char *f1, const char *l1,
const char *f2, const char *l2) {
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Check type equivalence in a name list like <name1>|<name2>|...
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equiv = SWIG_TypeNameComp(nb, ne, tb, te);
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return equiv;
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Check type equivalence in a name list like <name1>|<name2>|...
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SWIG_TypeEquiv(const char *nb, const char *tb) {
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Check the typename
*/
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SWIG_TypeCheck(const char *c, swig_type_info *ty) {
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swig_cast_info *iter = ty->cast;
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iter->next = ty->cast;
iter->prev = 0;
if (ty->cast) ty->cast->prev = iter;
ty->cast = iter;
return iter;
}
iter = iter->next;
}
}
return 0;
}
/*
Identical to SWIG_TypeCheck, except strcmp is replaced with a pointer comparison
*/
SWIGRUNTIME swig_cast_info *
SWIG_TypeCheckStruct(const swig_type_info *from, swig_type_info *ty) {
if (ty) {
swig_cast_info *iter = ty->cast;
while (iter) {
if (iter->type == from) {
if (iter == ty->cast)
return iter;
/* Move iter to the top of the linked list */
iter->prev->next = iter->next;
if (iter->next)
iter->next->prev = iter->prev;
iter->next = ty->cast;
iter->prev = 0;
if (ty->cast) ty->cast->prev = iter;
ty->cast = iter;
return iter;
}
iter = iter->next;
}
}
return 0;
}
/*
Cast a pointer up an inheritance hierarchy
*/
SWIGRUNTIMEINLINE void *
SWIG_TypeCast(swig_cast_info *ty, void *ptr, int *newmemory) {
return ((!ty) || (!ty->converter)) ? ptr : (*ty->converter)(ptr, newmemory);
}
/*
Dynamic pointer casting. Down an inheritance hierarchy
*/
SWIGRUNTIME swig_type_info *
SWIG_TypeDynamicCast(swig_type_info *ty, void **ptr) {
swig_type_info *lastty = ty;
if (!ty || !ty->dcast) return ty;
while (ty && (ty->dcast)) {
ty = (*ty->dcast)(ptr);
if (ty) lastty = ty;
}
return lastty;
}
/*
Return the name associated with this type
*/
SWIGRUNTIMEINLINE const char *
SWIG_TypeName(const swig_type_info *ty) {
return ty->name;
}
/*
Return the pretty name associated with this type,
that is an unmangled type name in a form presentable to the user.
*/
SWIGRUNTIME const char *
SWIG_TypePrettyName(const swig_type_info *type) {
/* The "str" field contains the equivalent pretty names of the
type, separated by vertical-bar characters. Choose the last
name. It should be the most specific; a fully resolved name
but not necessarily with default template parameters expanded. */
if (!type) return NULL;
if (type->str != NULL) {
const char *last_name = type->str;
const char *s;
for (s = type->str; *s; s++)
if (*s == '|') last_name = s+1;
return last_name;
}
else
return type->name;
}
/*
Set the clientdata field for a type
*/
SWIGRUNTIME void
SWIG_TypeClientData(swig_type_info *ti, void *clientdata) {
swig_cast_info *cast = ti->cast;
/* if (ti->clientdata == clientdata) return; */
ti->clientdata = clientdata;
while (cast) {
if (!cast->converter) {
swig_type_info *tc = cast->type;
if (!tc->clientdata) {
SWIG_TypeClientData(tc, clientdata);
}
}
cast = cast->next;
}
}
SWIGRUNTIME void
SWIG_TypeNewClientData(swig_type_info *ti, void *clientdata) {
SWIG_TypeClientData(ti, clientdata);
ti->owndata = 1;
}
/*
Search for a swig_type_info structure only by mangled name
Search is a O(log #types)
We start searching at module start, and finish searching when start == end.
Note: if start == end at the beginning of the function, we go all the way around
the circular list.
*/
SWIGRUNTIME swig_type_info *
SWIG_MangledTypeQueryModule(swig_module_info *start,
swig_module_info *end,
const char *name) {
swig_module_info *iter = start;
do {
if (iter->size) {
size_t l = 0;
size_t r = iter->size - 1;
do {
/* since l+r >= 0, we can (>> 1) instead (/ 2) */
size_t i = (l + r) >> 1;
const char *iname = iter->types[i]->name;
if (iname) {
int compare = strcmp(name, iname);
if (compare == 0) {
return iter->types[i];
} else if (compare < 0) {
if (i) {
r = i - 1;
} else {
break;
}
} else if (compare > 0) {
l = i + 1;
}
} else {
break; /* should never happen */
}
} while (l <= r);
}
iter = iter->next;
} while (iter != end);
return 0;
}
/*
Search for a swig_type_info structure for either a mangled name or a human readable name.
It first searches the mangled names of the types, which is a O(log #types)
If a type is not found it then searches the human readable names, which is O(#types).
We start searching at module start, and finish searching when start == end.
Note: if start == end at the beginning of the function, we go all the way around
the circular list.
*/
SWIGRUNTIME swig_type_info *
SWIG_TypeQueryModule(swig_module_info *start,
swig_module_info *end,
const char *name) {
/* STEP 1: Search the name field using binary search */
swig_type_info *ret = SWIG_MangledTypeQueryModule(start, end, name);
if (ret) {
return ret;
} else {
/* STEP 2: If the type hasn't been found, do a complete search
of the str field (the human readable name) */
swig_module_info *iter = start;
do {
size_t i = 0;
for (; i < iter->size; ++i) {
if (iter->types[i]->str && (SWIG_TypeEquiv(iter->types[i]->str, name)))
return iter->types[i];
}
iter = iter->next;
} while (iter != end);
}
/* neither found a match */
return 0;
}
/*
Pack binary data into a string
*/
SWIGRUNTIME char *
SWIG_PackData(char *c, void *ptr, size_t sz) {
static const char hex[17] = "0123456789abcdef";
const unsigned char *u = (unsigned char *) ptr;
const unsigned char *eu = u + sz;
for (; u != eu; ++u) {
unsigned char uu = *u;
*(c++) = hex[(uu & 0xf0) >> 4];
*(c++) = hex[uu & 0xf];
}
return c;
}
/*
Unpack binary data from a string
*/
SWIGRUNTIME const char *
SWIG_UnpackData(const char *c, void *ptr, size_t sz) {
unsigned char *u = (unsigned char *) ptr;
const unsigned char *eu = u + sz;
for (; u != eu; ++u) {
char d = *(c++);
unsigned char uu;
if ((d >= '0') && (d <= '9'))
uu = (unsigned char)((d - '0') << 4);
else if ((d >= 'a') && (d <= 'f'))
uu = (unsigned char)((d - ('a'-10)) << 4);
else
return (char *) 0;
d = *(c++);
if ((d >= '0') && (d <= '9'))
uu |= (unsigned char)(d - '0');
else if ((d >= 'a') && (d <= 'f'))
uu |= (unsigned char)(d - ('a'-10));
else
return (char *) 0;
*u = uu;
}
return c;
}
/*
Pack 'void *' into a string buffer.
*/
SWIGRUNTIME char *
SWIG_PackVoidPtr(char *buff, void *ptr, const char *name, size_t bsz) {
char *r = buff;
if ((2*sizeof(void *) + 2) > bsz) return 0;
*(r++) = '_';
r = SWIG_PackData(r,&ptr,sizeof(void *));
if (strlen(name) + 1 > (bsz - (r - buff))) return 0;
strcpy(r,name);
return buff;
}
SWIGRUNTIME const char *
SWIG_UnpackVoidPtr(const char *c, void **ptr, const char *name) {
if (*c != '_') {
if (strcmp(c,"NULL") == 0) {
*ptr = (void *) 0;
return name;
} else {
return 0;
}
}
return SWIG_UnpackData(++c,ptr,sizeof(void *));
}
SWIGRUNTIME char *
SWIG_PackDataName(char *buff, void *ptr, size_t sz, const char *name, size_t bsz) {
char *r = buff;
size_t lname = (name ? strlen(name) : 0);
if ((2*sz + 2 + lname) > bsz) return 0;
*(r++) = '_';
r = SWIG_PackData(r,ptr,sz);
if (lname) {
strncpy(r,name,lname+1);
} else {
*r = 0;
}
return buff;
}
SWIGRUNTIME const char *
SWIG_UnpackDataName(const char *c, void *ptr, size_t sz, const char *name) {
if (*c != '_') {
if (strcmp(c,"NULL") == 0) {
memset(ptr,0,sz);
return name;
} else {
return 0;
}
}
return SWIG_UnpackData(++c,ptr,sz);
}
#ifdef __cplusplus
}
#endif
/* SWIG Errors applicable to all language modules, values are reserved from -1 to -99 */
#define SWIG_UnknownError -1
#define SWIG_IOError -2
#define SWIG_RuntimeError -3
#define SWIG_IndexError -4
#define SWIG_TypeError -5
#define SWIG_DivisionByZero -6
#define SWIG_OverflowError -7
#define SWIG_SyntaxError -8
#define SWIG_ValueError -9
#define SWIG_SystemError -10
#define SWIG_AttributeError -11
#define SWIG_MemoryError -12
#define SWIG_NullReferenceError -13
/* Compatibility macros for Python 3 */
#if PY_VERSION_HEX >= 0x03000000
#define PyClass_Check(obj) PyObject_IsInstance(obj, (PyObject *)&PyType_Type)
#define PyInt_Check(x) PyLong_Check(x)
#define PyInt_AsLong(x) PyLong_AsLong(x)
#define PyInt_FromLong(x) PyLong_FromLong(x)
#define PyInt_FromSize_t(x) PyLong_FromSize_t(x)
#define PyString_Check(name) PyBytes_Check(name)
#define PyString_FromString(x) PyUnicode_FromString(x)
#define PyString_Format(fmt, args) PyUnicode_Format(fmt, args)
#define PyString_AsString(str) PyBytes_AsString(str)
#define PyString_Size(str) PyBytes_Size(str)
#define PyString_InternFromString(key) PyUnicode_InternFromString(key)
#define Py_TPFLAGS_HAVE_CLASS Py_TPFLAGS_BASETYPE
#define _PyLong_FromSsize_t(x) PyLong_FromSsize_t(x)
#endif
#ifndef Py_TYPE
# define Py_TYPE(op) ((op)->ob_type)
#endif
/* SWIG APIs for compatibility of both Python 2 & 3 */
#if PY_VERSION_HEX >= 0x03000000
# define SWIG_Python_str_FromFormat PyUnicode_FromFormat
#else
# define SWIG_Python_str_FromFormat PyString_FromFormat
#endif
SWIGINTERN char*
SWIG_Python_str_AsChar(PyObject *str)
{
#if PY_VERSION_HEX >= 0x03030000
return (char *)PyUnicode_AsUTF8(str);
#else
return PyString_AsString(str);
#endif
}
/* Was useful for Python 3.0.x-3.2.x - now provided only for compatibility
* with any uses in user interface files. */
#define SWIG_Python_str_DelForPy3(x)
SWIGINTERN PyObject*
SWIG_Python_str_FromChar(const char *c)
{
#if PY_VERSION_HEX >= 0x03000000
return PyUnicode_FromString(c);
#else
return PyString_FromString(c);
#endif
}
#ifndef PyObject_DEL
# define PyObject_DEL PyObject_Del
#endif
/* SWIGPY_USE_CAPSULE is no longer used within SWIG itself, but some user interface files check for it. */
# define SWIGPY_USE_CAPSULE
#ifdef SWIGPYTHON_BUILTIN
# define SWIGPY_CAPSULE_ATTR_NAME "type_pointer_capsule_builtin" SWIG_TYPE_TABLE_NAME
#else
# define SWIGPY_CAPSULE_ATTR_NAME "type_pointer_capsule" SWIG_TYPE_TABLE_NAME
#endif
# define SWIGPY_CAPSULE_NAME ("swig_runtime_data" SWIG_RUNTIME_VERSION "." SWIGPY_CAPSULE_ATTR_NAME)
#if PY_VERSION_HEX < 0x03020000
#define PyDescr_TYPE(x) (((PyDescrObject *)(x))->d_type)
#define PyDescr_NAME(x) (((PyDescrObject *)(x))->d_name)
#define Py_hash_t long
#endif
/* -----------------------------------------------------------------------------
* error manipulation
* ----------------------------------------------------------------------------- */
SWIGRUNTIME PyObject*
SWIG_Python_ErrorType(int code) {
PyObject* type = 0;
switch(code) {
case SWIG_MemoryError:
type = PyExc_MemoryError;
break;
case SWIG_IOError:
type = PyExc_IOError;
break;
case SWIG_RuntimeError:
type = PyExc_RuntimeError;
break;
case SWIG_IndexError:
type = PyExc_IndexError;
break;
case SWIG_TypeError:
type = PyExc_TypeError;
break;
case SWIG_DivisionByZero:
type = PyExc_ZeroDivisionError;
break;
case SWIG_OverflowError:
type = PyExc_OverflowError;
break;
case SWIG_SyntaxError:
type = PyExc_SyntaxError;
break;
case SWIG_ValueError:
type = PyExc_ValueError;
break;
case SWIG_SystemError:
type = PyExc_SystemError;
break;
case SWIG_AttributeError:
type = PyExc_AttributeError;
break;
default:
type = PyExc_RuntimeError;
}
return type;
}
SWIGRUNTIME void
SWIG_Python_AddErrorMsg(const char* mesg)
{
PyObject *type = 0;
PyObject *value = 0;
PyObject *traceback = 0;
if (PyErr_Occurred())
PyErr_Fetch(&type, &value, &traceback);
if (value) {
PyObject *old_str = PyObject_Str(value);
const char *tmp = SWIG_Python_str_AsChar(old_str);
PyErr_Clear();
Py_XINCREF(type);
if (tmp)
PyErr_Format(type, "%s %s", tmp, mesg);
else
PyErr_Format(type, "%s", mesg);
Py_DECREF(old_str);
Py_DECREF(value);
} else {
PyErr_SetString(PyExc_RuntimeError, mesg);
}
}
SWIGRUNTIME int
SWIG_Python_TypeErrorOccurred(PyObject *obj)
{
PyObject *error;
if (obj)
return 0;
error = PyErr_Occurred();
return error && PyErr_GivenExceptionMatches(error, PyExc_TypeError);
}
SWIGRUNTIME void
SWIG_Python_RaiseOrModifyTypeError(const char *message)
{
if (SWIG_Python_TypeErrorOccurred(NULL)) {
/* Use existing TypeError to preserve stacktrace and enhance with given message */
PyObject *newvalue;
PyObject *type = NULL, *value = NULL, *traceback = NULL;
PyErr_Fetch(&type, &value, &traceback);
#if PY_VERSION_HEX >= 0x03000000
newvalue = PyUnicode_FromFormat("%S\nAdditional information:\n%s", value, message);
#else
newvalue = PyString_FromFormat("%s\nAdditional information:\n%s", PyString_AsString(value), message);
#endif
if (newvalue) {
Py_XDECREF(value);
PyErr_Restore(type, newvalue, traceback);
} else {
PyErr_Restore(type, value, traceback);
}
} else {
/* Raise TypeError using given message */
PyErr_SetString(PyExc_TypeError, message);
}
}
#if defined(SWIG_PYTHON_NO_THREADS)
# if defined(SWIG_PYTHON_THREADS)
# undef SWIG_PYTHON_THREADS
# endif
#endif
#if defined(SWIG_PYTHON_THREADS) /* Threading support is enabled */
# if !defined(SWIG_PYTHON_USE_GIL) && !defined(SWIG_PYTHON_NO_USE_GIL)
# define SWIG_PYTHON_USE_GIL
# endif
# if defined(SWIG_PYTHON_USE_GIL) /* Use PyGILState threads calls */
# if !defined(SWIG_PYTHON_INITIALIZE_THREADS)
# if PY_VERSION_HEX < 0x03070000
# define SWIG_PYTHON_INITIALIZE_THREADS PyEval_InitThreads()
# else
# define SWIG_PYTHON_INITIALIZE_THREADS
# endif
# endif
# ifdef __cplusplus /* C++ code */
class SWIG_Python_Thread_Block {
bool status;
PyGILState_STATE state;
public:
void end() { if (status) { PyGILState_Release(state); status = false;} }
SWIG_Python_Thread_Block() : status(true), state(PyGILState_Ensure()) {}
~SWIG_Python_Thread_Block() { end(); }
};
class SWIG_Python_Thread_Allow {
bool status;
PyThreadState *save;
public:
void end() { if (status) { PyEval_RestoreThread(save); status = false; }}
SWIG_Python_Thread_Allow() : status(true), save(PyEval_SaveThread()) {}
~SWIG_Python_Thread_Allow() { end(); }
};
# define SWIG_PYTHON_THREAD_BEGIN_BLOCK SWIG_Python_Thread_Block _swig_thread_block
# define SWIG_PYTHON_THREAD_END_BLOCK _swig_thread_block.end()
# define SWIG_PYTHON_THREAD_BEGIN_ALLOW SWIG_Python_Thread_Allow _swig_thread_allow
# define SWIG_PYTHON_THREAD_END_ALLOW _swig_thread_allow.end()
# else /* C code */
# define SWIG_PYTHON_THREAD_BEGIN_BLOCK PyGILState_STATE _swig_thread_block = PyGILState_Ensure()
# define SWIG_PYTHON_THREAD_END_BLOCK PyGILState_Release(_swig_thread_block)
# define SWIG_PYTHON_THREAD_BEGIN_ALLOW PyThreadState *_swig_thread_allow = PyEval_SaveThread()
# define SWIG_PYTHON_THREAD_END_ALLOW PyEval_RestoreThread(_swig_thread_allow)
# endif